Chr:
Chr4
Start:
31859549
End:
31862014
Strand:
+
Ref_name:
LOC4337070
Sequence
(XR_001545426.1):
AGGGCACUGCCUUCAAGUUGUACAUUCCUGUAGCCUUGUAGAACUUCACAAUCUAUCCAUGCACUGUUCCCCAACAUGUGGAUCUCAUGUGAUAUCCUCUACCUGUACAUAGAUCUUGUGUUCUUAUGUGAGUUCCAGUAGACUUCUUAAUACUUUGGGUGCAUAUUUCUGGUCGUCACUCCUGAAGACUUUAGUGGUGUUUAGCUAGUUGAAUUGGCAUACAUUAUGGAUCAAAAUACCAUCAUGGCUUAUUGGCUUAAUAACUGUGGAAAAUGAUAAGUUUGCAGUGUUCUGCAACUGAUAUUAAGAUUUAGAUCUGAUUAUUGGAUUGCAAGACAGAUGUGGCAGAAACACAUCUUUGGAAACCAACAAUGUGGCAGUUACAUGCUUGAAGGUAUAACUCCCAUAGUCUCAUCUCGAAUGGGCCUUCACAAGAAUAACCAUCUUAUCAUGUCAGUGUAUCAUGGAGUCCCUUCAGAUUUCAGUCUAUUAUUAUGCUCAAUAGGUUCUUAUGGAAGAUUCAUAAGUAUGACUUUUGAAUUGCUUGCUAGUUGUGCGCUGUAGUACGCUAGCACAGCUUUGAAAGUGAAUAGCGUGGCAAUAAACAGGCCUGAUAGCUGCCAUAGACUCAAUGUGUGUUCAAGUGCCAAGUAGUCCUGGACACUAUUUGCACUUCAAAUUAUAUGAAUGCUUUCAUGUUAUUGAACAGACCAUAAUUUUCCGCUGCAGCGUUGUACAGGAGUCUUUGGAACACCCAGAUUCUUUGCUGGUUUGGAUCCCAUACUCGGGGGGCUGCAGGACGGACAAGAGCAGCAGCUUUCUCCUCUUCAGUGUUCCUCCAAGCUGCAGGAGCUUCAUACGGAUGACUUCGCAGGUGUCCACGUGAAGCCCAUCUGCAGACUCCUCUCUUCCUCCCUCACCAAGCUAGUCCUUGGAUGGAACGACGAGGUGGAGCGUUUCACGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
7.11%
ME_num:
MEP:
19.11%
HE_num:
HEP:
73.58%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.68
Avg Expression:
25.09
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.00161477264466 | 1.8831991043205e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.58362420325738 | 2.70524855694426e-15 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.35940671420201 | 1.90135784815111e-09 |
| 4 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift | -1.01973028362348 | 0.000163671812409733 |
| 5 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.04103645795763 | 0.00599950300232112 |
| 6 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.0411355573538 | 0.00611190523976189 |
| 7 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.04123639711376 | 0.00602325568601906 |