Chr:
Chr4
Start:
24719585
End:
24722712
Strand:
-
Ref_name:
LOC4336266
Sequence
(XR_001545650.2):
AGUAGUAUCUCCUAUGUCUUCCAGGCUCUCUCUCUCGUUUACUCUCCCCCACUCUCUCCUCUCUCCCAGUCUCUCUUUCUCUCUCCCUCCUCAACCGGAUGCCGUUCUCUCUCCACCUCUCGUCGUCUCUCUGCCCCUGCUCGCGCGGAUCCGCUGCCGGCGAUGACGGGAUGGGCCGAGCCUUCAAGCCAUCGUUUCUGCUCGCGUGAUCCGCCGUCGACGGCAACGGGAGGGGCGGAUCCGGCGACUCUUCCCCUCCCGCACGGAUACCGUCCACUCUUCGGCCCCCUCUCACGUGGAUCCACCGUCGGCGGCGACGGUAGGGGCAGAUCCGGCGACCUCUUCCCCUCCCGCACGUGUCCCGUCUUCUCUCCGCCCGCCUCUCGCGCGGAUCCGUCGCCAGCGACGACGAGAGGGCCUUGGAGCUGCAUGGAUCGAGGGAUGAGAGCAACGUCUCCUCUUCUUCCCCUUCUUCCUCCUCACCUGACCAUCAGGAAAUCAAUCCUGUGGUUUUUUGAACUGUUGUACUGGAGAUUGAUGUCAACGUGAUAAUCACUGACUACUACAUGCCUGGCAUGACAGUAUGAUCUACUGAAGAGGGUGAAGGUAAGUUUUGUUUGCAUUGAAUUUAUUCUUAUCCUGUGAGCAUUCAUAAAUCUUGGGUCCUUUGUUGCUGUAAGUGGAGUAAAAUUUGCUCCUUUUGCUCCUCAUUUUGGGGGUACAAGUGUCAUCUUCAUUGAAGGACAUACCAGUUGUGAUCAUUUCUUCUGAGAAUGUGCCUGCAAUGAUCAACAGGGUUGACUUCAAUGAUAACCUGGAGAUAAUGAUUGGAGGUGAUUUGAUGCCCUACAGGAAGAGACUUGCGAUCUGUAUUUUCUUGUGUGCUUCUAUUAUUUCUAUCCCUUCUAAUAAUAAUAUUGUAUGUCUUGCUGGCUUGCGAGAGAAAUAUGUAAAAUCAUGUUAGUGGGAGUGCUAAAAAUAGUGGAAAAAAAGGCGGGACAAUCAGACUGCUGGACGGAUAGAAAAGGAAAAGAAAAGCGACCGAACUCCUGAACGGAAAGAAAAGGGAAAGAAAAGCUCCUACCGGACUAAUGGACUGCGAUCUUUUUAUUGCCUGAUAGAAAGGUGGCUUGAUGUCUUAGAGGAAGAGCCUUGUCUGCUUCUAUCAUUUAUAUUGCUUGUAAUGUAAUGUCAUGUAAUAUUAAUAGCAUGACUCAACAUAAAAUCGGGAUAAAAUUGGAGUAGGAAUCGGUGCAGGGGCUCUUUUUAGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
0.2%
HE_num:
HEP:
99.59%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.50
Avg Expression:
87.03
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.37201654347689 | 1.32709175823572e-06 |