Chr:
Chr4
Start:
14956328
End:
14958591
Strand:
+
Ref_name:
LOC4335483
Sequence
(XR_001545690.2):
GAGGCGCACUAUCUCUACGCACACGAUCCCCACCUCCUCGACCUGACCUGCCCAGCCAGCCCCUCUCCUCAGUGAACUCCGCCUCAGCCGUCGCCACCCGCCGUCCCGUUCCUCCCUGCGACCUCUGCUUGGACAGCUUGCAGCUCGGAUCCUCGGAGCCGCUGCCUCGAUUUCCUCCUACUCGGUCCACUCGCUGUUCCUCCUGCAACCUUCCCCUUGGCACUCUGCUCUAUGGUGCUUCCGGCUUCAUCGCCGCCUCACCAACCACUGCUUUCUGGUCCCCUCACCUCCGGCUGGAAGAUUUGGCCAGUGUAAAGCAUUUGCAAAUUUUGGCGACUUUCUUUGAUGGGGAUUAUAUGGAUCUAGGGAUUACUUUGAUGCUGUCCAGUUAACCACAUUUGGUUGAUUCAAGCGGGUCUCCUCACUUCCGGUUGGAAGAUUUGGCCAGUGCUAGAGCAUUUGCAAAUUUUAUGGAUUUUCUUCGAUGGGGAGUAUAUGGAUCUGAGGAUUUCUUUGGUACUAUCCAUUUAGCCUCAUAUUGUUGAUUCAUACAGGUCCCCUCAUCUACUCCUGCUGGAGGCUGCUGCUGCGGUUUUCUUGAUGGAUUUUAUCAAACUCUCUCGGAUACUUCCCCUCUUUCUUAUUUCUUACAAUCAUUUAUAUGCCGAUCAGUUUUUGUCCAAAACAUAUGUUUAUUCUCAUGCAUUGAUCUGCAAUGACCAAAUCUAUGCUUCGAUCUUUUAAUUUGCUACAGUUUUCCCUGCUUCUCUAAUCAGUACCAUUACAGAUUUGUCUCUGUGACUGCUUAUUGUACUUUCAAAUUGCUUUACAGUGCAUGCACAAGUCUGUUGCCUAUUUUAGUACUAACCAAUAUAUAGCUGUUCCCAACGAACAUGGUAAAAAUAUUAUCUCUGCAAUUCUUUGCUUCUAUAGAUUCUCAUGCUUACGAUAUCUAAUCGAUAUCCAUCCUUCUUUUGCAUGGUUUUCAUUUUCAGAACAUUUCAGCUUUCAGUAUAUGAAGUUCAUGAAUGAAGUGACCGUUGUCCGGCUUGCAACUGUUCCAUGGUGCAAAUCAAUCAGUUUGGAUAUGGAACACGCAUUGUACGGGUUGCUGCUUAUAGGUUGUUUGGAUAUCACUUAAUGGAUCAAACUAGCUUGUCAUAUUUGUUUAUAUACAUGUGCUAUUUGGAAUUAAGUGCAGUGGUUGUACGGGUUGAUUCAGAGUUGAUCCCAGCUUAUAUCAGGUGAUUAUAUUGAUAACAUGUAUUACAAAUUUUAUUGAUUUUCAGUUUGAGUUAAUAUUGUUUAUCACUGUAUGCAUUGUUUUUUCCUUAGCAAUAAAUUAAUUCUUCCCCUGGCCUGUUGGUUUCUGAUACAUGUGAUUUACCAUUGUUAUUUGCAAGUGAUUUAUGUCUCUCUCUACAGAUAAAAAGGUCACACAUCAUUCUGUGAAACUGGACCAUCUCCAGAUGCAUUAGUGAUCAACCUACAAGUUGCUUUCAUCUUUUAGGGACAGAGGUAGCAAGUAAGAAGUAUGACAUAACAUACAAAAUAGAGUUGUUUUUUUCCUAGCAGUUCAUUACCACCAUUUUCUGAGUUAUAUCUAUGCAAUACAUAACAAAAAAAGUCUCACUCUCUUUUGGCAUGUACUGAACAUUCACUUCUGAAUGAUUUUUGUUUUCUACAUGUUCAACGAAGGUACCUGCAUUGCUCUAAGCCUCUAACUACUUAGGUGGCAAAGAAAGAGGUUGGUUUACAUAUGCUAAUAUGCUAUGUUCUCAUCUUGCCUCACCACAGAUGCCAUGGUCUUACUCCCUUGGAUUACAAACUUACGGUUUAGCAAAUCAGUCUGUUGGUAACAUUACAAUACAGUUGGUUUUGUUUUGUAUCUUAUUAGGAGUUGCCUGCGAUUUUGCCCAGCCACUUUGGUUUGGAAGAAAGAAAUUGAUGACUGAAUCAAUGAAGCUGUGAGUGGCAACGUUGCCUGUACAGAAGGAUUGGUCUAUCUUACUUUUGGCUAUCAAAUUGUACCAUGUGCUCAUAUACCUACAAUUGAUUUAAGCUGGCAUCAAUAAGAAUUACACCAACAAAUAUCUUCAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
24.59%
ME_num:
MEP:
8.13%
HE_num:
HEP:
67.07%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.74
Avg Expression:
62.96
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 10.4329706639774 | 2.33031761545455e-08 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.58396178463732 | 3.05019375496508e-16 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.23790090381724 | 4.80093825936168e-08 |
| 4 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 9.11756529102307 | 4.72830455753164e-08 |
| 5 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.11111479522149 | 1.15440762551149e-34 |
| 6 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -7.54596866443044 | 3.22531730292531e-06 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.28071795300317 | 3.1421377378527e-06 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.37470362640752 | 2.6415147951271e-18 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.15182446973231 | 0.000319149598098997 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.05460954921475 | 0.0268765193316496 |
| 11 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.23965748244765 | 9.55055699675992e-05 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.35820049271549 | 5.14436475938271e-08 |
| 13 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.2397476965941 | 9.59395610247322e-05 |
| 14 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.23982420061302 | 9.60612783034234e-05 |
| 15 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.42737488492072 | 2.70529286883557e-11 |
| 16 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.18551961074412 | 1.32076308818641e-17 |