Chr:
Chr4
Start:
8267081
End:
8268725
Strand:
+
Ref_name:
LOC4335206
Sequence
(XR_001544886.2):
CCAUAACCCUAAAAUUCAUUCCACCCUCCGCGCCCACGAUCCCUUCUCUCUCUCUUGAUCGAAAAGCGAUGGCGGCGGUUCCGGCGCCCGCCCUCCUCCCUACCACGAGCGGCUGCGGCGGUGCCCUUCCCCCUCUCCCCGCGAGCGGCGGCGGCGGCUCCCUCCGACCUGUCUCGCUUUCCUCGCCGGCGGCCGCUCCCUUUGUCCUGUCUCGCCUCCUCGCUCCCUCCUCCUCUCCUCCUCGCCUCCCUCCCGCGGUGGCGCGGGUUGACGGCGGUCGCGGGCGAAUCCGAGGGUGGUGGCGGCGGCUCCCUCCAUCCCCUCUAGCCUUCCUCCUGUGGCAGAUCCGCCGGCGGCGGCGGCCUCCGCAGGCGGAUCAAGCGGCGGUGGCUCCCUCCGCCCCCUCUCGCCAAGUCCCGCGGUCGAUCCGACGGUGGUGGCGGCGUUGGCGGCGUCCGCGGGUGGAUCCAUUAACAGUGGCGGUGGGCAGAUCCGGUAGCGGCGGCUCCCUCCGCCGCCUCUCUUCUCCCUCCGGCGGCGGUGGUGGUGUCGGCGGCGGCCGCGGAUGGACCCAGUGGCGGUAGCAACGGCCGAGGGCAGCGGUGGCAACGGCCGAGGGCCACGGUGGCGAUGGCCGAGGGCGGAUCCGGUGGCAGGCGAGUGAAGUUUGUGGUGUAUAUUGUUGUUCUUCUUGGAUGAUUAUUUUGUGAUUUUGUGAUGAUUGUGGUUGAUUUUUUGGGGGCAAAGAUUGGUUAGGUUUUGUUCUUUUCCUUGCGGUGUGUGCAUCUGAUUCGGUUGUGCCGAUUUUGGAAAGUGUUUUCCUUAUCCAAUUCGGAUUCGGGGGCUGCGAAGGCGCACCGCCGACGGACUUGCGACGAACAGAAAAUUACGAAUAUUUUAAUUACAAAUUUGGAAACUUCCUCCACGCAAAGCCGUAGCGAAAUUCUCACCUCAAGAUGGCCCUCACCGUCGGCCACCUCCAGCCGCCACUCGCCGGAGCCGGAGCCAAAAGCGUCGCCAUUCCCGGCCCACUCAUCCCACGCCGCCACAUCCUCCUUGCCGACGCCGACGUACUCCAUCCCCGCCACCCGGUGGCCGAACCUGACGCAGUCGAGCACCCCGAAGCGGCGCGCGUAGGCGCCGAGGUAGUCCAUCACCUGGCGGUGGUCCGGGAACACCUCCGUCACCGUCUCCGGCCACGGGAAGUCGGAGUACUGGUACAUGGGCCGCGGAGUCUGCAGCGCGGUGCCCUCCAGCGUCCACGCCCACACGCCACCCACGCCGGUGUCCGCCUCGAACACCACCGGCCGGCAGCCGCGCUCCAGCAGUUGCUUGCACGCGGCCAGGCCGCUCACGCCGGCGCCGACGAUGACCACCCGCUUCUUCUCCAUGAUGGCUAGUGGGCUAGGAAAGUGCGAGCUGUGUGAGUUGUUUGGAGUCUGAUGAGCGAGGUGGUAUUUAUAGUUGGUCAGUGCUAUACUUCCUCGAAAUAUAUCUUUUGACCAUGUCAUCUAAUCAUAAUAUAUAUAAUGGAUAAAAAUAUUUUUACUGUUUUUUAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
24.59%
ME_num:
MEP:
16.06%
HE_num:
HEP:
59.15%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.70
Avg Expression:
42.34
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.77596796950818 | 2.34620242062151e-16 |
| 2 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.26222443637907 | 4.54696507143915e-11 |
| 3 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.4607410783658 | 1.52402474586429e-11 |