Chr:
Chr4
Start:
7988579
End:
8001448
Strand:
+
Ref_name:
LOC4335195
Sequence
(XR_001545155.2):
UCCCAUUAUAUUGCUCUGCACUCCACCUGAAGGACGUACGCGCACAGCUGUUCAUACGACUAUACGAAGCCCUGUCUAGCUAAAAGUCUCCUCGGUCUCGAUCCUCACCUUGCCCCUGCAGCUGCAUACCCGGCCCUUUCGAUCUGGUUAUCAAUCGAUCCGGUCGCCAUGAACGACGGUCAAGGGUACUUUGCUGGCAAACCAGCGAAACCCAACGACAAAGAACAACAGGCCGGUGAUGAGGAGACGCAAGCUGUUGAUGCACAAACACCUGGCGCUGUCCAUGCCUCGCGGGCGUUGGAGGAGCAGCAAGCAAGAAGAAGUCUGGCCGUGUUCUGUAUGCAUAUAACUCAGCUGAAUCAUUCAAGUAAAUUGCAUGGAGGGAGUUGCCAUGGAUCAGCAUCUCUGUGUUGCAAGUUGUAAACAUCUCCGGAACCUUCGUGCUCAAAUUUAUCGAUGUUCGAUAUAUACGUUGGUUUCAUUAAUUGGUAUAGUGGGUAUGUUGAAAUUCAAUGGAACUAUCAACUAUGGUUGAUUAUCAACCAUGCACCGCAAAUAUUAUAAUGUUGACCUCUCUAAGAGCAUCCCCAGCGCUCAUCCAAAUAUCAUCCUCCAUAUACCCAUAUGGAUGGCCAUCCAAAAAAUAUUCCUCAUUCAUAUCUCUUCCCACUCUAACAGAUCAUCCAUAUUACAUCAUCUAUAUCACAUCCUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
63.21%
ME_num:
MEP:
27.64%
HE_num:
HEP:
8.94%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.92
Avg Expression:
6.29
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.53432264228116 | 0.0185127690489268 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.84380505155529 | 4.12524012834911e-08 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -2.10768539953196 | 0.00445611814816719 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.44160556634242 | 0.000979355141740702 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.23207068832504 | 0.0375436366079938 |
| 6 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.10692249544581 | 0.0169947859019935 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.76105141540397 | 0.00312319451113944 |
| 8 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.10700299644641 | 0.0173484185297308 |
| 9 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.10712574610214 | 0.0170451094853746 |
| 10 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.31473629565403 | 9.0933610735642e-08 |
| 11 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.15977137561436 | 0.0497486167442615 |
| 12 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.76037958054963 | 2.42473942044244e-08 |