Chr:
Chr4
Start:
5139031
End:
5142178
Strand:
-
Ref_name:
LOC4335074
Sequence
(XR_001544908.2):
CUCCUGAUGAGCGGUGGUCCUCGCGCGGCUCUUCCUAUCCUACUGCCAACUCCCGCGAUGACCGCGCGCUGACCACGCCUCGCUCUCUCGCGCCGCUCCUCCUCGCUGAUUCCAACAGCGACGGCGAUUCCACUGAUUCCACCAAUUCUGCCGCUGUUGGAUCUCCACUGAUUCCAUCGAUUCCACCAAUUUCGCCCCGAAGCGGUGACUCCGCCGUGCGCAUCCUCUCUCGCUCGCUCCUCACUCGACCAGUGCCGACCCACUGGUGCACCGCCACAACGCCGGAUCAGCGCCGAGCCACCACCGCACAACUGCAUCCCCUUCCGCCGGUGCCACGCCCGGGACUGCCCCCGACGACGACGGACGCACGCUCCCAUUGCUCCUCCGCAAAUAGCUCCUGAGCUUCACGCGAAGCCCGUGCUGGCCCGGCCCCACGAAAGCCUCUCCUCCGCGAAUCCCUCCCCAUGGAAGCCCUAAGCUCCUCUCUCUUCCUCAGGGAGCGUCGCCGAUCCGUGGGUCGCUGCUCACCCUCCCGUCAUCGGCUGCCACCCGGCGUCUAUCGCCGUCGCUGUUGGAUGCAGGUCGUUGUCCGGCGUUGACUGCUCUCGCUAUUGGAUCAAGGUUGUCGCCCAUCGUCAGGCAUCAUCCACUGCCACCGCCGCUCGCCGGCUCGCCGCCCGAUCGAGCAGGCCAGCACCCAUCUCCAGUGCCCACCAGGUGAACCAGGUAUAGAGGAUGUGGUGGAGGCGUGGGGGCUAAUCACUAUCAGUCAGAUUUUCGUGGAUCGAGCUUAUUACCUGAGUUUUCUCCUCUUCGCUGAUGGAGCCGGUUCAGAUGAAUGUGCUCUUAUCCUGAUACGGCAUAUAGUGAAUCAUUGUGGAAUGACUGAAAUCUGUUUUACUGUGGAAUGAGCAAAAAAUGUUUACUUGCGUUGAUGUCGAGAAGGUUAUAUAAGUCGGGAGCUGUUUGGAAAGGGUUUUAUCGGAGCAACAUUAUUGGGAAAGUAUUUUGCGGAGCAGUUUGGAAAGGGUUUUAUCAGAGCAAUUCUGGAAAUUGUACUUUUAUUGGAUCAAUAAUGAUUGGAAAGGAUUUUAUCGGAGAAAUCUUGAUUAGGAAGGCAUUCCCAUGAGUUGCAAAUCCAAGGAAGUUAAUAACACGACCUGUCUACAGUAUUACAAGCUAAUCGAUUUAUCCCAUUACAAGCUAAAGCCCACUGGUAUGUUUUUGUUUCUCUGCCAUUCACCAUUGAAAUAUGGAAUGCCAUAUUCUUUUUUCCUUCGAUGCACUCUUAAUUGUCUGUUCCAAUUUCUUCGACCACUUAUAAUUUGCAGUUUGAUAUUGCUUUAUCCCGCUGCUUUGCCAUUAGAACCAACAAAAGGAGAAAUGCCUUUAGCUGAAGUCCUCAGAUUCAAUACCAAAGUUGAUUGUUUGAUUCUAAACAUAAUUAUCAUGGUUUCUUGUGGUCCUUUAAUGGUGAUAUUAAGAUUUGGGCAAAAUUGGUACAAAAGCAACAUGUCUAAAAUACCUUGGUAGCUUCCCCAUUUCUAUUAUCUCUCCAAUUUACUCUUAAAUUGUAUGAUACAACAUUAUCAAAUUUCAUAGUAGUUAUUUUGGACUCACCUCUUCAAAGUACCUGUCAUCUGGGUUGGGAGGUAAUUUCUAAAUCUCAGCUCUACUAUGUGAUGAUCUGACAUUCAUAUUUUACUAUAUACUUCUUGUGACUAGAAUUCCUGCUGCAUAUUACGUACUAGCUAGGUAUUUCCUCUUACAAUAAUGGUUGUCAGAAUUAGCAGCAUGAAACUGAUCAGCUCAACUCCAUGCUUGAACAAUUUGUGAGUUUUUCUUUACUCCAGAACACCUGAUCAGUUGACAUCUAUGAUAUAUUUAACAGAUUAUGUUGAUUGCGCAUAAAGAAGUAGCCCAACAUAUUUCUGCUAUGCACAUGAACAUAUUGGUACAUAUUUACAAUUCUUUAUUUUUACGAGGCACUAUGCUACUGAUAGUCUAUUGAUGGGCUAUAGCUGAAUUUAGUUUAAAAACAACUACUGGUUUUUUUUUCACCUACGUUGCCAUUCCUCCGUUCCUGCAUGUCCACUUUGUUGCAAAUCUAGAAUUGUGGAGAAACUCUUGAUGUUCAUCAUAUGCCAGUUCAUACUUUUCUAAAUUGCCAAAUUGAAAAGAGGGUUACAUAUUUAUUCAGUCCUAUCUGCAGGUUGGAAAUUGUAUGCAGCUAGCUAGAUCACUUUCUUAUCACAACUCACAAGAUUGCCACUUUAUUAGCUAUAGUUUGAAUCUAGGAUGGUCUGCCAUAAGGAGCUUUAAUUACUUCUAUGAAUUUUGUUAAAUCAAAAUUGAUCCAUUUGUGGCUUUUAUUGUUUGAGAUUGAAAAAAAAAUCAGGUUGCUGCUCAAGAGCAAAAGGCAAUAACAUGGGGCAGUGAUAAAACUAUUUUUGGGCACAGUUAGUCUGUGACUAUGUCUUCAUGGGCAUAAAUGAAAGAGAAACUCAUUGUUAAAAAACUGAAAUGGAAACAACUUUUCCAUGGUGAUCCGAUUGACCAUCGCUCGGAUCUUGGAUAUCAAUACUGUAAUUCAUAAAGUACAGAAUACAUGAUUCAGAUGGAGAAAGGCAAUACAUGAGGAAGAUGUUUUGAACAAUAUAUUAUCUUAGGUUAAACUAAUGUUUUUUUUCACAUCUGGUGUUUUGUACCCUUACUAAUAAUAAAUUUGAUACUAUAAAUUCUAUCUCAUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
29.67%
ME_num:
MEP:
40.45%
HE_num:
HEP:
29.67%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.78
Avg Expression:
16.89
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.09653883384072 | 5.80743637916317e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.12323173151454 | 9.16730808471728e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.0552502417745 | 4.22052351547512e-06 |
| 4 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.60623515697012 | 0.00206066924466586 |
| 5 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.06354895246099 | 0.0010449252826697 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.50802422400342 | 4.66041392223335e-06 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -2.06250465211822 | 2.09699913658947e-11 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.65703636694626 | 6.34953364433204e-09 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.49600105938711 | 1.96721963992679e-07 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.36087197339953 | 0.00117695242955147 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.80141407637762 | 1.99358356458422e-13 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.29575473630951 | 0.00172393901288926 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.01658877022727 | 0.000952836990700141 |
| 14 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.98118655938378 | 1.67744730191347e-15 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.4906957183986 | 9.64887781438743e-07 |
| 16 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.98126770800305 | 1.8653043066688e-15 |
| 17 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.98134195775117 | 1.70296143352467e-15 |
| 18 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.66892098162191 | 1.11184678473533e-11 |
| 19 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.12160114103304 | 0.00243880710507807 |
| 20 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.07684515336348 | 1.10517843413733e-05 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.26347190200934 | 1.42860334258397e-09 |