Chr:
Chr4
Start:
1678746
End:
1680441
Strand:
-
Ref_name:
LOC4334985
Sequence
(XR_001544950.2):
CCUUCUUCACCCCCUUGCUCUCUAGCUUUCCCAGCCAUCCCUCCUCACUCUGUAGUCCACCCUAGAUCCAAGAAACCAGAGUGGGAGAGCUCCUUCUUGCUCUCCUCGCCAUCAUCUUCUUGCCUGCCGCCGGGAUGAUGCCAUCACCGCCGCCCAACGGCCGAUCUCUGGGAACGCCGACCUCGCCACGGGAGCUCUGGAGCGCGGCUACACCGUCGUCAACGCGCAGCCGCGGGUUCGCGCAGCUGUUCCCGUCGCCUCGAGGCGAAUCCGGCUGAGCUGCUGCUCCACCAGCUUCGCCUCACCAUCCUCUCCAAACGCCCCAAGAAUCCCUCAGAACCGUGCAGCGAGGAGGGAGAUCGACCACCGUCUUCUCCAACUCCGAUCUAGCGCCUCCGUCGUCGAUUCCCAUUCAACCGAUUCGGAGAAUUCGGAGUUCGUGGAGCGAGACUCUGAGGUUGAGUGUGUUUCCACACAGCAGCAAGGCAAGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
15.65%
ME_num:
MEP:
31.3%
HE_num:
HEP:
52.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.72
Avg Expression:
51.38
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -6.54569249069952 | 9.43174858795738e-10 |
| 2 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.86965352453948 | 3.13455509934575e-05 |
| 3 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 2.37765716067976 | 0.000786353556226509 |
| 4 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 1.96937714731615 | 0.00195813565583453 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.68090252551481 | 1.86587502677574e-05 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 1.36053612822464 | 0.00104220987700245 |
| 7 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -5.19150214290828 | 0.0190703512353465 |
| 8 | 9311 // leaf // control--/--9311 // leaf // salt | 1.9911207905168 | 4.07128462404893e-11 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 1.90014057539427 | 6.85260522242952e-05 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.39090326296137 | 0.000312442826157794 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 1.13156202553474 | 0.0306345494013739 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 1.48741978616234 | 0.000229874127268834 |
| 13 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 4.65023395858555 | 1.12443846782304e-22 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 1.21955955994219 | 0.000811437914873762 |
| 15 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 4.65014550369295 | 1.22000472875502e-22 |
| 16 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 4.65007577443588 | 1.16237469652577e-22 |
| 17 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.65663546414845 | 2.91422316650925e-13 |
| 18 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.52633042415359 | 6.34570443564003e-40 |
| 19 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.25867550800664 | 0.00281590899183888 |
| 20 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.75793444817718 | 2.75313046177927e-11 |
| 21 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.92792706432964 | 9.2831237117771e-32 |