Chr:
Chr4
Start:
1652403
End:
1653689
Strand:
-
Ref_name:
LOC4334983
Sequence
(XR_001545152.2):
CUCUUUCCCCUCUAACCUCUCAAUCUCUCUCUACUCUAUCUCUUCCUCAAUCCCCAUCCCCCUCUCACUCUCUCUCCUCCCUCGCUUGCUGCAGCGAGCGGCUGCACCCAGCGGGCAAGGCACGACGGCAGCGUGCCCUCUCUCUCCUCCCUCCACUUACUGCAGUGAGCGGCGGCGGCCGGUCGGCAUGGCGUGAGAGCGGCGCGCCCUCUCUCUCCUCCCUCCCCAUCCUGCAGUGAGCAGCGGUGGCUGCCCAGCAAGGUGCGCACAGUGGCACAGCCUCUCUCUUUUCCCUCCCAUUGCUGCAGCGAGCGCCGGCGGCCGGCCGGCAAGGCGUGCACGGCGGCACACCCUCUCUCUCCUUCCUCCCCUAGCUGCAGCGAGCAGUGGAGGCGGAGGUCGGAGAUUGGUGGCGAGCGGCGUCGAGCACAGCUGGGUGGCUCCGGCCGGUGGCGAGCGUGGCAAUGGGGAGGGCGAACCAGAGGAAACCGGCGAGGAGCCUCAACGCCGCCAUUGCCUCGGCCUCCGCCUCCGCUUCGGCCGCAGCUGUGGCAACCGACAUCCCGCCUCCACUUUCUACACCACCGCACGUCGCUCGGCUCCGCGUGUCGACCGCCGUCGCCGCUCGACCUGUGCCGGCCCCCGCGCGUCAUCAUGCACGCCGACCGCCGGCGCCGCUCGACCUGGACCCGCGCUUGCCCCCACGUGAGAGAGAGAGAGAGAGAGAGAGAGGGAAGAGGGGGAUAGGAGAAAGAGGAGGCUCGUAGCCGCUGGCGCGCCACUCGUCCUCGACGGCGCCACCCUUGCCUCCACGGUCGCCGAUCUUUGCAGUCAGCCUCUGCCGGCUCAGGGUGAUAAUUCGUACUUUUCCAACUAGAUACGAUCCAUCGGAUUAAAGGAAAAAAAAGGGUGAUCUCAUAAUCAACUGCGACAAAGGGAAUAGGCAAAGUGAGGAGGGUGUCCCCCAGUAGUGUGUCGGUGUUGUACUUGUUAAACAGAUAGAUAGUUCGGAUAGGAACAUAUCUGUUGAUAAGAUAAGAUAGAGUUUAGUUUGUUUCUUGUUUUUCUGUUGUGAAGAUGUAAUCUGUAAACUCCUAUGUACACGCCACGCCAGGGGCUGUUUCUGGCUAUAUAACACGGACCGUGGAACCGAGAGAGGCAAUCCACGUUAAACCCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
38.21%
ME_num:
MEP:
40.65%
HE_num:
HEP:
20.93%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.86
Avg Expression:
20.20
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -10.6194757415446 | 6.35855387220745e-21 |
| 2 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -2.81873810618301 | 0.0268718182635321 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.03850958444797 | 0.0292885274640919 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.93118365560506 | 0.00345712508755301 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.3108966973512 | 0.0227893946454905 |
| 6 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -2.13166965634271 | 1.18302045754087e-07 |
| 7 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -9.04792436609684 | 9.75156800833592e-12 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.37215527175053 | 0.00675267666006847 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.53065448823074 | 0.00281597621225974 |
| 10 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.23043680172643 | 0.0245840830214367 |
| 11 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.77348490853047 | 1.06266094187148e-70 |
| 12 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 3.08357429256496 | 1.28117011766508e-19 |
| 13 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.86837823972379 | 0.00244516365855969 |