RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC4334767

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr3

Start:

35565777

End:

35568310

Strand:

-

Ref_name:

LOC4334767

Sequence
(XR_001544828.2):

AGUUUAGGAUAACAUUUUAAAUUGCGAUAGCAAGAUCACAAAUUUCUCAGCGCCGGCUGCCGCCUAACCCUAACCAUCGCCGCUCCGAUCCUUCCCUCCCCCGCCGCCGCCACAGACGAUUCUGACGGCCCGCCUUCGCGCGCGACGCCGCCGGCGCCCCUCCCCGCCAACUCCCCUCCUCCCCUCAUCCAAAUCGACUCCGCCGGCACGAAAGCGCCCCUCCUCCUCGACCGCGUUCCGACACUGCCGGUGCCCCCUCGCUCCGACCGCGUUGCGCCGCCGUCGAAUCCCGUCUCCAUUGUCAAAUUGAUUGCACACUAAUUUUGAAAUAUGGGAGCACAUCAGAAGGUUCUCAUUAUGACAGCGGAUGGUACACAGAUGCAAUCGUAAACCUUCUGUCUAUAUAGUCAAUAAAACAGUUUUACUGGAUCCUUGAAUUUGCUGUUCUGCAACGUGGAGUGUAUAUAGCAUACUUGAGAAUCAUUGGUUGUCACUGCAUUAUAGUUGUACAUCAUAGAUCCCAUCAAAUAUUGGAUCAAUUGUGACUUGCGAGCACAUGUGUGCAGCGUGAGCAGUUGGGCUGCAACUUGCCAGGGCAAGAUCAUUUGUCAAGGUUGGAAUUGCUGCGGGAUCAUCCGAGGCCUCGACACGACAUACCCUCGUCUCAUUGCUCAGUUUACAGAGUCAAGUUCCAAGAAGAUCUUUUUGCUGAGGGAGCACUGGCCCUAGAGCAAAGGAUUAUGUAGAUGUGCGGCGCAUGCAGCAGCGCAAUGGCAGCAAAAGUUUAUCAUAAUAUCCUCAAUGAUCGAUCUGAAAAACAAAGUGUGCUGAAAUGGUAGUAUAAGAUAAGAGCUUGACCAUGUAGGAUGCACUUGGCAAGCCUUACUGGUUCUCAAUUUUCUUCUGAACGGAUUUGCACAUCCUGAUAGCAUAAUCCAAUGCUUCUUUUUCCCCCCUUUUUCAGGUUAAUUCCAGUGGCCAGUUUGUAGGAAUAUCUUACAUAUUAUGCCCUAUUGAUUUCUAACAUAUCAUGGACUUUUGGAAACAAGAUAAAUGGAAUGGCUUAUGAAUGCACUUUUCAUUCA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

4

LEP:

0.81%

ME_num:

26

MEP:

5.28%

HE_num:

461

HEP:

93.7%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.51

Avg Expression:

24.53

Tip: OSA-LNC4334767 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-1.045248235858990.00446286269859875
2Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"-1.371538492435690.00102891706875245