Chr:
Chr3
Start:
32113208
End:
32113851
Strand:
+
Ref_name:
LOC4334279
Sequence
(XR_001544259.2):
UUGCAGGGUAGGGAUGGGAUUUCACAUCCGAAGGGAUCAGAUCUGAUCUGAGGAGUCAAAUACUCCUAUGCGUCUCUCUCUCUUUGCGGCAGGGCGUGUGUGUGGUUUGAGGAGAAGGAAUCUGAUGGAGCGGGAAAUUUGCAGAGGGAAGGUGAACUAUAUGUGGAAAACCUCUCUGCAAAAGAGAGAUAAGGAGGUAGGGAUGCAGAGAGGUGCUCCAGGGACCCGUAUGCCGCCGGGUCACCGGAUCUGCACCCCGCCGUCUUCCGUCUCCGCCUUCCGUUUCUGCACCGUAAUGAUGCUGCUUGCCGAUUUGACUGCGAAUAGGAGUAGAUUUGACUGCCCGAUUGAUUGAUAGAUCCAUUGUUUACCACAGAAACAAUAAUAAUACUCUACUACUACUCCUACAUAGUAGGAGUACCUUGCCUAUUGUAUGAUACUAGAAGUAGUAAAUUGAUGGUACAGGAUAAUACAGACUUAUAAAUUUCUUAUUAGGGCGAUGGUACAGGAUACUACUGGGAGUAGACUUUAUAAUUUUUGGCUGUGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
0.2%
HE_num:
HEP:
99.59%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.66
Avg Expression:
91.13
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.5027979241998 | 2.58010271415377e-11 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.54475178644716 | 5.67419752067913e-15 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.80180789106108 | 1.01603686318902e-21 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.1354967034051 | 1.88652033417847e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.81769015627641 | 1.47858045470018e-18 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.69380860776789 | 3.70911673642174e-14 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.32697829865867 | 9.13539821884683e-12 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.26831724417572 | 2.7415195097094e-06 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.07438398650883 | 0.000554879873652964 |
| 10 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -2.29766782027187 | 9.51651130067415e-10 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.63025514048717 | 3.15155722681348e-18 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.700589053793 | 1.05280317909427e-21 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.53005930974928 | 6.65609276922535e-13 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.38787223787782 | 5.00990323683738e-14 |