Chr:
Chr3
Start:
31085036
End:
31087282
Strand:
-
Ref_name:
LOC4334143
Sequence
(XR_001544008.2):
UCAUCCCUCCCACAUCCACCGCUCCAUCGCUCCCGCAUCCCCGCAUCCACCGCUCCAUCGCCAUCCCCUAACCAUCCCGUGCCGCCGUCGCCUUCGAUCCUCCCCGCCGCCAUCGCCGUCCUCCUCCACCGCGUCGCCGACGGCUCCAUUACCGUCCCCUAACCGUCCCGUGCCGCCGCCGCCUUCGCUCCUCCCCGCCGUACUCCACCAGCUCCCUACCCCACUGCUCGCCUCGCCGCUGCCACCGCCUCCGUCGAACCACCGCUGGCGCGGGGAGGACUCCUCGUGGCCGACUCCGAAACCCUAGACACUACCCCCAACGCCGGUCACGCCGUCCGGUCCGUCGCCGCGUCCUCCUCUCCAUCACCCGCCGCCAAGGGAUUCAAGGCCCCUGUUCAGCCCCUUCUGCCACCCCACAUGCCUUCUAUACAGCAUCCUUUGACUAGCAAGCAACCUGGGAAGACCUUGAAGAUUUGAAGACAAGGUUUCCUGGACUUCCUGCUUGGGGACAAGCAGGCUUUCAAGGGGUAGGGAUUGUCAGGAACACGCCAAGCAACGCCAAGGUAGCGGUACAAAAAGAUACAGAAGAGGAGAUCCGUCCUGAUGAAUCUGAAGAGCAAGAGGAAGAAGCUGAAGCUCCAGUGGAGAGCGAUGGCGCGAAGCAAGGAGGAGGAGAACAAGACUUGGUGGCCAAGCGUCGGUCGUCAAGGCCUAUCAAGCCCAACCCACGUUAUCAAGUCUCUCAAUGGGUUGCGUAAAGCAGUUGUCGUUGUAACAGCCUGGCUCUGUCCAGCUGGCGAUGUAUCACGUGAGAGAGAGGAGGAGUAGUAUAUGUACUCAAGUCUAAGAAGAACAGAGACAUGUCUUGAGACUGGCAACUCGGAGGCGAAGGCGGCGGCGGACUCAAUCCUGUUGGAUUGGAGUAUAAUUCCACUAAAGUUGCCUAUCUAUCGUGUGUUCUUGUGUUCUUGUGAUUUGUUUCCCUUUUUCCUGCUUAAAUCAGUGUUGAAUCUUGUAAGAUCCUGUCAGCCGGCUGCAUCAACCCCCCACAUCCCGGCCUCCCACUAGACCACCACCCUCAUCCCGCGGCGGCCUCCAUCGUCGACUCCGCUUCCCCCGUGCGCAGCCCACAUCCACGCCGACAGUCCGUCGCCUACGCCACGUCUCGCAACUGGAUCCGCUCCUCUCCGUCGAUCUCCACCACGGUCCCUUUCGCGCCGCACCGGAAGCUGCCCGCCAGUCCUCUGAUCGUCGCUGGAUGCUGUCGGCGGGUGAUGCAGUACUCACCCGUCUCCCCUCCAUCAGCCGCACCGGAAGCUGCCCGCCAGUCCUCCGAUCGUCGCUGGAUGCUGUCGGCGGGUGAUGCAGUACUCACCCGUCUCCCCUCCAUCACUGAGGGACAUUCCCAUCAACAAAAGGUACACUUGGCGGCAUCACUAAUUUAACUCCAAUCGCUUAUAUACAAAGCUGCCGAGAAUUGAGUUUAAUUUAUGCGGAAGAGUGCUAGGGAGCGGUAUGCUGCUCUUAGUGCUGACGACAAGGAAGCUAGGCUUCAAAAGAUGCGAGAGUACUACCAGCGAAAAAAGAGUAUUGAUCCUGUACCUACCCAUGGUAUUUAAAUUAUUAUCUCACAAACGGCGUAGAUCUGAAGUGAAAUCUUGCCACUGGACACAAGCUCACUCUUCUUCAGGACGUCAGGUUCCUUCAUCACCCGGGUACUCUUUCCUACUGUGAAAAUAAGACCAGUUUCUUCUGUUUGUCCUGUUUUUACUUGAUUAAUUUCUGCGAUAUCAAUUUUUUAACAUGCGAUAGAAAUAUCGUUGAUCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
7.32%
ME_num:
MEP:
35.37%
HE_num:
HEP:
57.11%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.56
Avg Expression:
13.87
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.17295979850737 | 0.000593782987522936 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.03002734967233 | 2.28521532314117e-12 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.03004104931872 | 0.0135704399854765 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.93646886110586 | 1.7871383343994e-09 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.21721126002621 | 0.000441333843168275 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.1859933737517 | 0.00016821915210368 |
| 7 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.46928111456695 | 6.02445885412139e-09 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.65786985952881 | 2.45078217590591e-11 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.53096482539836 | 5.61862898568068e-06 |
| 10 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.11702755822837 | 2.14637028651856e-06 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.17024118207972 | 0.000243610734386386 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.35500688750477 | 1.98919376325545e-05 |
| 13 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.12877436102509 | 2.7164463994341e-10 |
| 14 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.28740898857657 | 8.205609690282e-07 |
| 15 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.68071494082614 | 3.91127517316768e-08 |