Chr:
Chr3
Start:
30544448
End:
30547679
Strand:
+
Ref_name:
LOC4334075
Sequence
(XR_001544193.2):
UAAAGUUGGUACGUGUAUGUCAAAAAUAGUUUGUUUUCAGCGAAAUUCAAUCUUGUGGUUACCACAAUAUAGAGCACAAUGCCACUUGACUGUAAUUAUCUAAAGUCUCAAGCACGUACACUAUGUACUACCAGUAAAAAUAUCUAGACUGCAGCUCCCUCUUUUUUCCUCUCUCUUCCCGUCUUUCUCCGCCUCUCUCCCUCCUCACUUUCUCCGUUUAUUCCUCUCCCUCAACGUUGCCGGCCGAUCCACCACAUCGUCGACGGCCUAUCCACAACAUCGUCGCAGGCCUUCUUUUUCCCUCGAGUUGCCGGCCAGAUCCACGAUGCCAUCACCAUGGAGGUCCUCCUGGAGGGCGAAGACGUGGAGGCGGUGGUGGUAUUCGGAGGCGAGCAGCUUGAGGCGGAGAGAGUGGUCGGAGACGGGGAGGCCGAGUGAGCCACGGAUGGAUUCGCCUCGCUCGCCAUCUCCUCCUCUCCAUCUCGCCUCCCUCCCGCGGUAGAUCCGGCAUCGAUGGCGGCGUCGGCGGCGGCCGCGGGUGGAUCCGGCGGCGGAUGAGGACGGAUCCAGCGGCGACGGCUCCCUCUGCCCCCUCUCUCCUCCCUCCCACGGUGGAUCUGACAGCGGGGACGGCGACCGCGUGUGGAUCCGGUGGCGGUGGCGCUGGCUGAGAGUGGAUCGGGUGGCAGCAGCUUCCUCCUGCGGCGGAUUCGAGGGCAGCGGCUCCUCUAGCAGUUAUCCGGUGGCUGCUGCUCCCCCCUCCCCGGAGUGGCGGCCGACAGCUGCUUCCCUCCCCUGGUGUUGGCAGCAACUCCCCGCCUCCCUGGCUGCCCCUCACCUCCCCGACGUGGAGCCGACGGUGGUUUGAUUUUUUUAUUUGUGAAUAUUUUGAGGAUUUUGUGAUUUGGAAUGUUGAUAUAGUAACCACAGUACGACGCCGGUUUGAUUUGGGAUGUUGAUUUUGUGGAGAUUUUUUAUUUUGGUUUGGGAUUGCAAUUGAGUAAUUUUGUUAUUCAUGUAUUUUGGGAAUUAGGGGCAAUGGGAUUGGGAGCAAUUGACUCGAUUAGCCGAUUGAUCGAGUUGGCUUCUUUUAUUUUCACUCCAAUGCCGAUUGAUAUAUAUUUGUUUUCUUUUUCGGCUUCUUUUGAGUCCGCUCGGGAAAAAAAAAUUUCAAGACGGUCUCGGAUUCAAACACGGACGACGGACGAAAAAAAUUGAUCGGAAGCAUUAUGUGACAACCGGAAAAAUCCAAAUAUUUAUAUUAGUUAUAGAUAUAGAUAUUCCCAUAUGAACCAAAUAAUAAUCGGUGACAAUAAUAGUUACCCCCGAGGUCAUAGAAUUGUCAUAGAGGUAGAAAUUGGAUCGAUGCUUCCACAACGAAAUCGGCAAAUGGAUCAUGAUAAUAAUUAAUUAAUGUGCCUCCACAGGAAACGAUUUGGAGCGCUUUUGGGUUGGAUGGGCCUAGUUUUUGGAACAUGGGCCAUUCACGGAGCUCGCCCCUGCCACAGAUUAUGAUCGAUUUACAUUUUAAUCCUUGGAUUGCCUCUCGUCUUCCUGCCGCUCCGCUCGCCGUCGCCGCCGCACCGGCGGCGAACAGCGGCGGCUAAUUGGCCUUCCUGACGCCAUUGGAAGCGCAAGGUUGGAUUCUGCUUGCACUGACAUGCAAUGCCCAGUGGGCAGGGGCGACGCGCACCAAGAAGAAACUUGUGUCCAAUAUUCAAGAAGGAAAUGUGAGUUUGACAAAAAGAUGUGGAUCGAACAUCUCGAAGUUGAAACCACACAAAAAUGUCUGUCAUUGUGAUAUCGGUGUUUGGUUGCGAGGAAGAGCACUGUGUCUCUAUCAGUCAUUGGUUUUCGAUAACCCGAUGAGGAGCGAUUUUCUACUCGAAAACGGAAAGGUAAACCCGGAUUGUGUGUGUGAAUGUGUUCCAAGUUUAGUUCGAGUACGCAUACAAAUUAGCUGAUAUCAAGAGAGCUUAGGACUUAUUCGGUUUGAAGGAAUUUCCAUCCAUAGAAAAAGGGAAAAUAUAGAAAUAGAAAUGCAUGCAUGAAUUUUCCAAAAGAUUUAAGUGGAUAAAAAUUUCUUUAUGUCUUCUCUCUACAACUCGUAGAUAUUCUCCUGUGCUUACAAUCCUACAAACUAAAUAACACUCAUAUAAAUUAAUUCUUAGAAAUCUAAACACACUGUCGAUUGAGAUCAUAUUAUCAGAGAGACGGGUAUACGUACGCACCUGAUCAACAAAAUAGCUGCAUUUCCCUCUCGCAUUCCUCGAUCUCUUGCACUGGCUAUAUUAGCUGGGUACGUACUGACUCUGUUCGUGGUGUGUUCCAUAGCUUUGUGUGCCCAACAGGGAAGGAGUGAAACUGUCACAGCAUGAUCUAACCAUCACGUACUCAGAAGAAGCCUCAGCUAGCCGCCUUCCUGUUCGAAACCAGCGAGCUGAGCUGAUUUCUUGUCUGCAAGUUAGAUCAUGCUGGCAGCUUCACGCUUUCUCUUGGGCACCGGAGGAUCGAUUCGAUUCGAUCGACAUUGACACUCUCUCGCGCACCCAGCUAGCUGCUCGUUUAUAAAGACGGCGAAUCCAUCGACGAAGAAGAAGACGAGGAGGAGGAGGAGGAGGAGGGGAUCGAGCGGUGACAUGCACAUGGGGGGGCAGAUGGAUGGAUCGAUCGAUCGGCGGCGUAGUUUAUCGCGGCCAUGUCGCUGGCCAGGAGGAGGAGGAGGAAUCCGAGAGGCGAUGGCAGCGUGCGGGUGCGGGUGUGUCGCCAAUGAGCGGCAAGUCAAAGGGCGGGGUGGGCACAUGCGACAGUGGGAGUGGGGCGUGUCGUGGCGCGACGUGGAGGAGGAGAACGUGGUGUCCUCUCGGGCUUCCUCCCCGGCAGGAAUUAACUGCCCGUCUUUUCUGUCUCGAGAAGCCAAACCGCAUUUUGUAAACAAAUUUUUUUUUUUUUUUGGUUUACUGCAACAACAGCAGCAGCCGCCUAGUGGUACUCCUUCGGUUAGGCUUUUUAAGGUUAUGCCAUUUAUCUAAAAUAACACGGUGUGUUUAGUUGCAAAUUUUUUUUUUCAAACUUUCAACUUUUUCAUCACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
16.87%
ME_num:
MEP:
44.31%
HE_num:
HEP:
38.62%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.66
Avg Expression:
12.31
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.01782078723983 | 6.82616907654455e-06 |