Chr:
Chr3
Start:
26733969
End:
26736178
Strand:
+
Ref_name:
LOC4333709
Sequence
(XR_001544226.2):
CUUCGCCGUCUCUGACCGGAGAAAUCGUGGGGAAAAAAUAGCGAGGGCCAAGAAACAGAAGAACCCGCGGGGAGAAGGCGAGAGGGGGGAUCAGGAAUUCAGGAUGCGGCUCUCCUUCCCCCUGGUGGCCGGCGCCGUCGUGAUUGGAGUGAUCUCUGGGAAUGUUAUAUUUGGGCCACCUCUUCAGAAGUACUGGGCAGAGAAGCAGCAGCAGCAGCAGCAAGAGGGAGCAAAAGAGGGGCAAACUGGAACGACAUAAUUAAACACAAGUGAAGCCAGUUUUGCUGAUUCAACUUCUGCCAAGCUUACAAGAAGUCCCAAUAUCAGAACGCUGAAGCUACAACAUUGUGAAAACUAUUCCAUUAGUAUGCUCUAGCUCUAGCCUUUGUUAGAACAGUUUCAGGUAGCUGUAUCUGUAUGCCCUAGUUGUUGAAAGGAACAUUGCAACAUCCACAGAUGAAAGGAACAUUCCAAACCAUCAUUUUGGGCACACCAUUGUGAUAUUGAGUUUUGUGUUUUGUAAAUAGCUCCAAAUUAGUUUCAUACCCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.41%
ME_num:
MEP:
0.81%
HE_num:
HEP:
98.58%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.55
Avg Expression:
45.97
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.23357078819326 | 0.000244778260535775 |
| 2 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.27147282730615 | 0.000488065871612406 |