Chr:
Chr3
Start:
21631061
End:
21633320
Strand:
-
Ref_name:
LOC4333341
Sequence
(XR_001544661.2):
CAUGAGUUCGACUCCCACAGUGCACGCCGCCACGUCAGGUAGAGGAGGUGGUGCUUGCGUGUGAAUGCAAGGUCGGUGGUGAUGGCACAUUGCUUGGACACCGCCAUGGCCCCGCCCUCUCUACUUGGUACUUGCAGUAUAUGGCGAUGUUGCCGGAUCUAGCGCAUCUACACGAUGGAUGACCUUGUCAUGUUCAGGAGUUCAGUGUGAUACUGGGUUCAACCUUCCUAAGAAGGAGAACGGCAGCUGCGGCGGCCAGUAUAACUUGGCCUCGAAAAAAGGUGAUUUGCCAACUCCAACUAUUCAGGUGGUACUGCCCUUCUCUGCAGUGACGGAGGAUGAAUUUCAGAAGCAGUUGACUCAGGACAGCGAAGUGAGUGCUUCAGCUUCAGAGCCAUGUUCAAAGAGCUUGUGUGUUGAAAGAUUGAGCAAACGUGAAGUGCAGAAAAAGCAUUAAGAAUUUUUGGAGUCUAAAAGAGGAAAUUGUAUUCAUUUUGUGUGAAUUGCUGUAAGUUUUUUUUCUCUGAUUUACUUUAUGAUGCAACAUAUCUCUGGUGACACUAUCUUCUUUAAACAUUUUAAAUUUCCCUUUGCCGCAAAACAUCACCUUUGUGACCAUGUUUUUCUGUACGGUCAAUCUUUUUGGCUACACGACUCAGCUUUGGCGAGAGGCCGCAUGGGAUAAACCAAUGUUUCUAUCUAAAGUGUUCUUUCAAAAUCGUUUUUGUACUGAAUAAAAAAUGAAGCUUAAUGGAUCUGAAGCUAUGUACAGGAAUCAGAAGGGCUAUUUAGCAGCAACUGCAGAGUAACAACAGAUGAUUGUGCCUCUUCUAUUUGUGCUAUUUAAAAAACACUUUUUUAACAAAUUUCAUAUUGUCCUUUUGUAUAGUCAGCCAGAUGCAGCGUGUUGCAUGGGACAUGGAGCAUGCAUGUUACCAUAUGCAGUUCAAGGCAUGGGAUUAGUGAGCUUUAAUUGGGUAUCCUGCUAAGAUUCAUUUCUGAAAAAACAUACAAGAAUGUCGUUUUCAAUCAUGCUAACUGUAAUUUUUUUAACAAUUGGGUUAAGACCAAAAUAAAAUGAUAUAAGCCUCUAUUUCUUCUAUCAGAGAUCUAUUACAAUUUUUUUGGGGGACAAUAACGAAUAAAACAAACUGGUGAACAAUUUUCUUUCCCUUAAAUUUGUACAAAAUUUGUUGUGUCUUUGCUGAUUAGCUGCAAUUGUGUGAACCUGGUGGCUAACGAGGAAUGAUAUGGUGUUUAGAGAUAACAUUGCUUACUCCCUUCUAAUUUAACUUUUUCAAAUUAUUUCUCAACUGAUGUAGUGGAAACCUCUCCUUCCCCAAGGAGAAGCAGAUGGAGGCUCUGGUGGCACGUCUGAAGGGGCAAUAGCAAGGCUGCGACCAAGAUCAAGAGUUGGAUGAUGUUUUUCCUACCAAAAAAAGUUUGAAGUCCGUGUUAAAGUAAGAGUUGUCAAUUUCUGCUAUGGGAGUUCUUACCCCUUUUUGUUUAGUUUGUCUAUCCUUUAAGUGACCCUAGCUGGUCGGGAUGUGUGACCAUGUGAGACUUCCCUUUUGCUCUGAGCUCAUGUAAACCUUGUAAUCCCAGCGAACCUGUCGUUGUGGCUUUCAAUAUAAGCUACGGGGUAGGUCUGAGGACCUUCUUGAAAAAACAUUUAUUCCUAUGUUGAAUGAAUUGUCUAGAAUUAGAUCCACAA
Sequence
(XR_001544662.2):
CAUGAGUUCGACUCCCACAGUGCACGCCGCCACGUCAGGUAGAGGAGGUGGUGCUUGCGUGUGAAUGCAAGGUCGGUGGUGAUGGCACAUUGCUUGGACACCGCCAUGGCCCCGCCCUCUCUACUUGGUACUUGCAGUAUAUGGCGAUGUUGCCGGAUCUAGCGCAUCUACACGAUGGAUGACCUUGUCAUGUUCAGGAGUUCAGUGUGAUACUGGGUUCAACCUUCCUAAGAAGGAGAACGGCAGCUGCGGCGGCCAGUAUAACUUGGCCUCGAAAAAAGGUGAUUUGCCAACUCCAACUAUUCAGGUGGUACUGCCCUUCUCUGCAGUGACGGAGGAUGAAUUUCAGAAGCAGUUGACUCAGGACAGCGAAGUGAGUGCUUCAGCUUCAGAGCCAUGUUCAAAGAGCUUGUGUGUUGAAAGAUUGAGCAAACGUGAAGUGCAGAAAAAGCAUUAAGAAUUUUUGGAGUCUAAAAGAGGAAAUUGUAUUCAUUUUGUGUGAAUUGCUUGGAAACCUCUCCUUCCCCAAGGAGAAGCAGAUGGAGGCUCUGGUGGCACGUCUGAAGGGGCAAUAGCAAGGCUGCGACCAAGAUCAAGAGUUGGAUGAUGUUUUUCCUACCAAAAAAAGUUUGAAGUCCGUGUUAAAGUAAGAGUUGUCAAUUUCUGCUAUGGGAGUUCUUACCCCUUUUUGUUUAGUUUGUCUAUCCUUUAAGUGACCCUAGCUGGUCGGGAUGUGUGACCAUGUGAGACUUCCCUUUUGCUCUGAGCUCAUGUAAACCUUGUAAUCCCAGCGAACCUGUCGUUGUGGCUUUCAAUAUAAGCUACGGGGUAGGUCUGAGGACCUUCUUGAAAAAACAUUUAUUCCUAUGUUGAAUGAAUUGUCUAGAAUUAGAUCCACAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
5.69%
ME_num:
MEP:
60.57%
HE_num:
HEP:
33.54%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flower
Tau :
0.81
Avg Expression:
26.63
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.24427278914722 | 0.0116761199044847 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.02588590354566 | 0.0108637435298234 |
| 3 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.44509366519582 | 0.00726755028846967 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 1.6650039252625 | 8.77665827772096e-05 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 2.66104781251917 | 8.88441694229575e-20 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 2.10236999727459 | 5.64415423225546e-08 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.1468291561976 | 0.0104170611133276 |
| 8 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.27356877230001 | 5.11795373645972e-26 |
| 9 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.5921163589193 | 9.20918234190032e-15 |
| 10 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.77303162079133 | 0.0293233953529357 |