Chr:
Chr3
Start:
19511634
End:
19515625
Strand:
+
Ref_name:
LOC4333234
Sequence
(XR_001544595.2):
CUCCGGUACACCCAAGAGAGACCGACACUCCAACACAGUUUCUUCCCCCAAAUCCCACUGCGAAUUUCUCUCACAAAUCAGGCGACGGCGAGUCUUUCUCCCACAAAUCCGGCGAGGGCGACGACGAUUGUGGGCUUCUGCUGUGGCGUGGCGACUGCUAUCGUCGAGCAUUCCUCAUCCCGUCCCCUCGAGCGCUCCAAAAUCCGGUAAAUGCAAUGACGAUUUGGUGGAUUCCGCGAUGCCAUCGACGACGGCGUCGGCGCUCGAACAACCUGGUGGUGCUGGAGCCGGUGGUGGGGUUCCACCGGCCGUUGCGGCACCCGGCCGUGCUCUCCUAGCACAUGACCAUGGCGCAGGUCGCCGACACCGUCGCGCUCCACCCCUGGCUCCUCGACCUCCUCCCGCUCCUCAUCGUCCUCCUAAUCUCCACCCACGUCCUCGUCCUCGUACAUACUUCUCCUAGCCGAGAGAGCUCAAGGCCCCCGAGCGGCAGCUCAGUGUUGGUCCCGUGCCCGUCCGGAGCCCCGUCAGUGCAGGGCCAAGCUUUGAGAGAGUUACUACAUCUAGAGAGGAAUCAGGGAAAACUAAGUGAAUACAAAACUAGGAUGGUUAGACUAAAGCCAAAGGUACCUAAACUUAUGUUUGGCAACAUUGAUAAGGGUUAACAAGUAAUGAAACAAUCAAUACCGCGCUGCAACUAACGAGAAAAACUGAAAACCGGAAGAGAGUAGUACAACAUGGAAGAAGAGAGAUUUGAGAGAAGAUUAUGUAGAAGAUGUAGAGCAUCCUUGCUCAAAAAAGUGCAAAAAUGUUAGAAAAGGAGAUAGCUUACUCAAUUGUAAACAUCCGAACUAAAAUUCAUUUUAGGGACUCAAAGAAAGAGAAAAAGGAAGAUGCAGCUUAGUGUAUGAAGUCCAAUUUGAGGGGUUGUUUGUGGUUUUUUUUUUUUCAAGAAUUCAUCACAGAUCUAUGAAUUUGUGGGGAAUAUAAGCUUACAUGUGAAGUUUGUGAUUUGGGUAUGCUUUUUUUGAUGGACCUCAAAUUUGAAUUUGGGUAUGAAACCCUAGACCUUCUCUACUUGUUCCUAAUCUCUUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.2%
ME_num:
MEP:
9.76%
HE_num:
HEP:
89.84%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.65
Avg Expression:
31.15
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.29866808914955 | 1.14740628798798e-16 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.41844441963272 | 7.72631527142059e-14 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.49525095287625 | 3.34583260597162e-15 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.12632112579273 | 0.00244613630666717 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.09833052859689 | 1.132114575042e-07 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.2361365413781 | 2.25533836621195e-05 |
| 7 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.57956407628595 | 2.18855864348491e-19 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.23268033660063 | 1.42766718685804e-14 |
| 9 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.30978413422377 | 1.05644588924517e-19 |
| 10 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.46208500332188 | 2.39657525871549e-09 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.89733992740261 | 5.3642945668091e-09 |