Chr:
Chr2
Start:
32679152
End:
32681164
Strand:
+
Ref_name:
LOC4330885
Sequence
(XR_001542970.2):
GCUGAUACUCAGACAAUGCUGAUCUACCAUCCCUCCUUUCAAGUUCAGGUCAACAUUCAUGACUUCGACAAACAGUCUGCCACCUUCAUCAGCUCAGCCACUGGGGCCAUCACCAUCUCCUACAUCAUGAGGAUAUGCACAAUGUGCUUUGUACAGAGGGAUCGUGAUCUAGGUGUUUGCAAAGAGCAUGCGUGAGGGCUAUAUACCAUUAGAGGAGCUCUUACAGACAAUGCACAGACAAUAUAGUAUUUCAAGCAUCAGGAUUUUUUUUCUUCCCUUUACCCAUCAUCAUUCUCUGCGGUGAGGACUACUAGGGAGGGAGUUUCUGCGGUAAUAUAUGCAACACCAAGCAUAUCCGAUAUACUUCCCGUCAGUGCAGGAGAGUAGUUUAGAGGUUGCAUAAGUGCAUGUCAUUGCUGGAGUGUACCAGUAUAAAAUGUGCUGAAAUUAUUUCGUAGCUAAUAAAGUAAAUUUACAACCUUUUGUUUAUACGGGUUACUGGUAAUUAGUAAGUCUCUCUGACGUGUUCCGGCUGUUAUGCUUAAUUCCAUGUCCAGUUUGUAGUUCUGUUGGACCUUCAAGCAAUUAUAUAUUGGUUGUUCGGUGACA
Sequence
(XR_001542968.2):
GUCCAGGGUGAAUGAGUGUAUCCGUCUCCAUCGUCAGCCUGCUGAUACUCAGACAAUGCUGAUCUACCAUCCCUCCUUUCAAGUUUCGUAGUUCAGGUCAACAUUCAUGACUUCGACAAACAGUCUGCCACCUUCAUCAGCUCAGCCACUGGGGCCAUCACCAUCUCCUACAUCAUGAGGAUAUGCACAAUGUGCUUUGUACAGAGGGAUCGUGAUCUAGGUGUUUGCAAAGAGCAUGCGUGAGGGCUAUAUACCAUUAGAGGAGCUCUUACAGACAAUGCACAGACAAUAUAGUAUUUCAAGCAUCAGGAUUUUUUUUCUUCCCUUUACCCAUCAUCAUUCUCUGCGGUGAGGACUACUAGGGAGGGAGUUUCUGCGGUAAUAUAUGCAACACCAAGCAUAUCCGAUAUACUUCCCGUCAGUGCAGGAGAGUAGUUUAGAGGUUGCAUAAGUGCAUGUCAUUGCUGGAGUGUACCAGUAUAAAAUGUGCUGAAAUUAUUUCGUAGCUAAUAAAGUAAAUUUACAACCUUUUGUUUAUACGGGUUACUGGUAAUUAGUAAGUCUCUCUGACGUGUUCCGGCUGUUAUGCUUAAUUCCAUGUCCAGUUUGUAGUUCUGUUGGACCUUCAAGCAAUUAUAUAUUGGUUGUUCGGUGACA
Sequence
(XR_001542969.2):
AGUGUAUCCGUCUCCAUCGUCAGCCUGCUGAUACUCAGACAAUGCUGAUCUACCAUCCCUCCUUUCAAGGUCAACAUUCAUGACUUCGACAAACAGUCUGCCACCUUCAUCAGCUCAGCCACUGGGGCCAUCACCAUCUCCUACAUCAUGAGGAUAUGCACAAUGUGCUUUGUACAGAGGGAUCGUGAUCUAGGUGUUUGCAAAGAGCAUGCGUGAGGGCUAUAUACCAUUAGAGGAGCUCUUACAGACAAUGCACAGACAAUAUAGUAUUUCAAGCAUCAGGAUUUUUUUUCUUCCCUUUACCCAUCAUCAUUCUCUGCGGUGAGGACUACUAGGGAGGGAGUUUCUGCGGUAAUAUAUGCAACACCAAGCAUAUCCGAUAUACUUCCCGUCAGUGCAGGAGAGUAGUUUAGAGGUUGCAUAAGUGCAUGUCAUUGCUGGAGUGUACCAGUAUAAAAUGUGCUGAAAUUAUUUCGUAGCUAAUAAAGUAAAUUUACAACCUUUUGUUUAUACGGGUUACUGGUAAUUAGUAAGUCUCUCUGACGUGUUCCGGCUGUUAUGCUUAAUUCCAUGUCCAGUUUGUAGUUCUGUUGGACCUUCAAGCAAUUAUAUAUUGGUUGUUCGGUGACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
29.07%
ME_num:
MEP:
30.89%
HE_num:
HEP:
39.84%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.76
Avg Expression:
26.73
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.14814523811655 | 4.34697072090929e-11 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.26428559426626 | 3.81053721491013e-34 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.06029526691461 | 2.1103221448272e-26 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.54671788738761 | 1.34023498396657e-28 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.09025602979009 | 1.18144545322112e-34 |
| 6 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.93612746763397 | 4.74482620324335e-07 |
| 7 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.11378137400326 | 1.03684941263695e-09 |
| 8 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.4081667893783 | 0.000635494298835248 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.30233197253625 | 4.26644714620909e-53 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.31709326189127 | 5.23888533466045e-17 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.72202353137286 | 0.000173331260389381 |
| 12 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 3.85358635520327 | 1.19603988840346e-09 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.41034091777876 | 2.33105035567064e-13 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.79259033790894 | 4.64940853299953e-31 |