Chr:
Chr2
Start:
22969454
End:
22972826
Strand:
-
Ref_name:
LOC4329843
Sequence
(XR_001543695.2):
GAAGUCUCAGUAAUUAUGUACUGCUAAUGGCACUACAUGAUUGCAUCCUCUGAUCGUCACCAUUCCAGCAAAGCUCAAAAGGGCGGUAACUGAUAAGGUGAUCUAAUUGGAAUAUUACCUGCAACCAUGUUCCAGCAGCAGCGAGGGAUGACAACAAUCCAGCGAAGAGCAGAGAGUCCUUUCCUUGGAAGACAGAUGCGACUAGGAUGCCCUUCUGCAUGGUGCUGGUGACAUGGGUGCCCAUAAGGAAUGCACCAGAGAACUCUAGCACCGCCGCAGUAAGCACUGCUUGCCGGAGUGUCAAAGCACCAGACCCUACUGACGUCCCCAUGGCAUUGGCCACAUCAUUUGCCCCAAUGUUCCAUGCCAUGUAGAACCCUGAAAGCAGUGUCAGAUAUGCCAGUGCCUUCAUUUUGUUCGUCCCAUGGAAGACCACUGACUGCAUCGCCAGUGGCACAGUGAGCGCUGCAAAUGCAAUCACCACUGAGAUUGACAUUGCCAUCCGGGGCGAUAUAUGGAAUGCCUUGGCCAUCUCCGACAGUUCAGAUUCCCCGUUCUGCUCCUCCUCAGACUCUGUGGCAUCUGCUUGCCCGCUGGAGCCAUUAUCAGCAUUGGCAAAGGAGGAUAUUGUGGCAUGGGGAAGGCUCAGGUGUGAGUUCAGUGUCUUGGCAGGUGACACAAUGGCUGAAGGGUAGUACCUCAGGCCAUGAAUCCGAGGUGGCAGCUGAGCAACAGGGUGACGGAGCAGGAGAGCGGCAGCCGCAGCUCGCCCUCCUGCUCCAGCAUGUGCUCGGGCAACGGAGAAGAAAGGGGAAGAUUGAGACAUGGAGUGGCAGAAGCAAAGUACAGGUUUGAGCAGAGAAGCACCGAGAAGAAAAAGAUGAGAUUAAGGGGGAGGAGAGGAGGAAGGUGAAUGAGAAGCGGUGGCCAUAGGUGUUUGUGGAAUGAAGUGAGCAUUGUUUUGUGGAUGGAGGAAAGGGCUUGCUUUCUGUGGUGGCCCAGCUCGGGCUGAGAUGAACGAGUGGUGGCUUGGAAUGAGUGGUGGAAGGGGAUACGAGCAAGAUUCCAGCCUAAUCCAUAACCUGGGGUUGCAGCUGACCACUUGACUGUUUUCAGUCUGCGUUACCAUCAGGGCCACCCUUCCCUCCAUCGUCUUUUUUAAAGAUCUAACUGUUGUCUGUUUCUGUUGUUUUGAUUCUCCAGUGCAAUAUUUAGCAUGACAUUAACAUCUUGCAUCAGUUUAAUAUGGAAGGCUUCUGAAGAUACUUGCGUCUGUGGUUCUAAAGCUGAUGCCAUCUACUGUGCAGAUAAAUGAAACUAAUACAGUUACAUGUGAAGUUCUCAUGUUAUAUGUACUGUUCUUAUGACAGAAAAACGUACUGUUCUUAUGACACACAAACGGUGACUCUUCAGAUAUACAGUCGGUGUUAGUAAUCAAGAUUUUCCAUGCUCAGAAAUCUAUUUAAUUGCAGAGGAAGUCAACACUGGUCUGGCUUCUCAUGGGUAUCAGGAUGGACCGGUGGUUCCCGUUUGGCAGUAGCGAUUGGAGCGCUGCUGGCCAAGGACCACAGAACAGAAAAUCAACUUGUGUGCUCCAGGCCGGAUGCUGAAGAGAAGAAUAAUCAGCGUCUUUGUCCCUGUAUCAGGUAUGGAAUACUUGAUCUUGUCUUCUACGAUCACUAGAGAUUGGCCACAAUUUAUCAGGUAUGGAAUACUUGAUCUUGUCUUCUACGAUCACUAGAGAUUGGCCACAAUUUAUCAUUUAGCAGACACCGCACUAGACACAUUUUCUGCUCAUCGAGUUGGCCAGGGCUCAGGUCGACAUUUUUUUUUUCCCUGCAAGUCGUGUGUUGUGGAUGAAGUAUUGUGUCUUUAAAGCGUGCACAGUUUCAAGAUUUCUUAUGGCUGAUUCUCCUUUUGCCGACUUCACUUUCGAAUCUGUAGUUAGGUAUAAGAAUCUUCCUGUGAUUUCAGUUUGGUGUUGCUUCUGAAUUUGUACGAUAACUUAAAAACAAAGAUACUGAGUAGUAGUAUACUUGUAGCUCCAAAUGGAGAUUUGUAACUCGACCAAAUUGCAGGGCACCACUGAGCCAUUUGCAAGUUCGACGGCCGCAAACAGGAGAGAUAGAAGCAUACUUAUAUAUAUAGGGGAGAGAGCGCAAUAACAUAGGAAAAAAAUGAUUGAAAUUACGUGAAAAAUGUGGUGUUAUAUUUUAAGCAAACCAUGUUUAUUUAUCGGUUUGAUUUUGAGAUAUCAAAUUUUGACGUACAAUAUUUCCUUGAAAGUCUAAUCAAAUUAUGGGGAGUAAAAGUGGUAACUCUAGAUUUAUGAUCAAAAUAACAUAGUGAAAUCCCUUCACAAGAAAUGACUCAGUGAAGUCCAUUUAAUGAAUAAUAAUCUUGGACUCGAAUUGUUCUGCGAUUUUGCUAUAUCUCACUUGAAAGAUUUUUUCUUUAUCUCUCACUCGAUUUUCUCACUCAAAUUUACAGUGUAUUUUCUUGUAAAUUAUAGUGUAAUUUAUGAAACUUACAGUGUAAUUUUUGAAUCUUCGCAUGUAAGUUUUGAAAUUUAUAUUGGAUUUGGUCUUUUUCUUAAAGAUAUGGUAAUUUAGUAUCUAUUAUGGUGUUUCUUAGUUGCUUUUUGCCUUUUACUAUGUCUAUUGGAUUUUAAUCCAAAGAUUAAAAAUUUAUAUGAUAUGAUCAUAGAAAUCUUUCGAAAGAUGCAUAGGUACUCCUUGUUUUGGAAGGUAACGCAAAUAGCCAAUGAAAGCGUUUUGAAAACAGAUCAGUAUUCGCUGUAUGUGGACUGUGGUGGUCAUUUCAUGGGCCUGAGGCCCUUGGGAUCAGCCUGUGCUCGCAACUCUAUCACCUGGGCCUUGUGUAGCCGACCAUUCCAAGUCCUACACUCGGACUCAAAUCACUCAAUUGUCCUUUCCUUUGCAGACAUUGAUCCUUCCUAUGGCCGGCUGAUUUGGAAAAGCAAAGUACCCGGACAUUGUGAAUUGUUUGUGUGGCUCAUCCAAUCAAGCGAUUUCACCAAUGUUUAAACGGCCGUUGUAUGUGUAAUCUUUGUACAUCAUGUAUACUUAACUAGACGUCAUGUAAUUUGCCUUAGAAAGUAACAAAGCCUUCUCUAAAUAACUAUUUCCUCUGGUCAGAAAGUGGUGUUUCGAAAUGUGUGUAAUUAACGUUAUUAAACUUUGACACUUAAGUUCUCUUUGAAUAUUUCAACUGAAUAUUUGAAAGUGAUAUGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.02%
ME_num:
MEP:
71.75%
HE_num:
HEP:
27.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.60
Avg Expression:
7.60
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.45422693575655 | 9.26238945684735e-14 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.30398305131901 | 2.7374500076929e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.34083475541169 | 7.09626251009085e-09 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.67603786774188 | 1.10129441022011e-12 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.85049700213103 | 2.99996191784423e-17 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.01211616560269 | 0.00126903448172251 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.36632717348516 | 8.73048588828891e-16 |