Chr:
Chr2
Start:
20451567
End:
20456758
Strand:
+
Ref_name:
LOC4329610
Sequence
(XR_001542908.2):
CCACUAACCCUAGCCAGCGCCGCCCCCUUGUCCCUCUUCCUCUCCCGCCGCCGAGAGCCGCGCGCGCCGCCGCCUCCGCCGUCCAGAGCCGCGCACGCCGCCGCGCGCCGCCACCCCCAUCGCCCGCCGCCGCCUUCGUCUCGCGCCGCCGCGCGCCGCCACCUCCGUCGCCCCCCGCCGCCAUCGUCGUCCCCGUCGCGCCGCCGCCUCCGCCUCCUCCUCGCGGCGCCGCCUCGCGCUACCACCGUCGGUCGCCGGCCCCCGCCACGACCCCUUCGUUAGCUACCGGAUCCGGCGCCGUCCGUCUCCACCGCCGUCGUAGAAAGCCCGUAGGCCACCUGUGUCCUCUUGCCGCCCGAUGUGACGAGGAGCUCGGCGGCGCCACACGGAGCUCAACCGAUCCGCAUCAUCCACGCCACUUAAAGUGAUUAUGAUUUGUGAAUCAACGGAUUUGAGAUUUGAACCUAGACAAGGAAGGGCUCUUGGAGCAACUGCUACAGUCAGCUGCUCUACUGGUUAGUUGGUCACUUGGCCGUCACUUGUCAGCUGUGGCCUCGGUGCCGGUGAAGUGACCUGCGCGGUGGACAAGUGCAAGGAGGAGCUGAGCAGGUGCCACGACUAGCACCGGUGGCACAAGGUGUGUGAGGCGCUCUCCAAGCUGCCCGUCGUUGUCGCCGAUUGCUAAGUAUGAUGGGGAUGAGGAGGAGCAGAGGUGGCCUAAAUCUGAUGGACAAGAUUUUGGCAGUUUGGGAAGCAUUUGGGAUAUGGCAGGUAAUUUACACAAGCAUGAACCAUAAAAAGCAGGAUUUCUCCUACAUGAUUGCAUUAGCUCAAGUAUCAGAAGUAAUGGUGUAACUGGAAUCUAAGUCUUACUGAGGCAUAUAUGUGUGUUGCACUUAUCAAUUAACGUGUGACUGGGAGAGAUCAACUUUACUGCUUGUUGUUGCAUUUACAUAUCUUUCUGUCUAUCUAUUUAUUAUUUGACUUUGUGAUUCUUCACAUGUAUUGGAUGAAAUUCAUCGGCAACCUGCAUCACUUUCACUUUCCAUGGUCUCUGCCCAGGCUCCAGAAUCCGUGGUUAAUUCAUUACCAUGUAAGAGCUACAAAAAGCAGACAGCCCAAUGCAGUGAUAACAUGGAACAGUGAGAUUCUUACCAUUCAAAUUUUAUCAUUUACUUGUUGUCACCUAGGGCCAAAAAUAGUUCUGAGUGUCAUUGAAGAAUGUCAAGUUCGCCGCUACAAAUGCAUCACAUUAUCUUACGCGUUUGAAAUAACUAUGCUGUUCAUGUCCAUUAUCCAUCAAAAAAUAAAUUGAGACCCUGUACAAAAUCCUUAUUAUUUUAUUUGCCUUACAUCAGCCUUCUAAUA
Sequence
(XR_001542909.2):
CCACUAACCCUAGCCAGCGCCGCCCCCUUGUCCCUCUUCCUCUCCCGCCGCCGAGAGCCGCGCGCGCCGCCGCCUCCGCCGUCCAGAGCCGCGCACGCCGCCGCGCGCCGCCACCCCCAUCGCCCGCCGCCGCCUUCGUCUCGCGCCGCCGCGCGCCGCCACCUCCGUCGCCCCCCGCCGCCAUCGUCGUCCCCGUCGCGCCGCCGCCUCCGCCUCCUCCUCGCGGCGCCGCCUCGCGCUACCACCGUCGGUCGCCGGCCCCCGCCACGACCCCUUCGUUAGCUACCGGAUCCGGCGCCGUCCGUCUCCACCGCCGUCGUAGAAAGCCCGUAGGCCACCUGUGUCCUCUUGCCGCCCGAUGUGACGAGGAGCUCGGCGGCGCCACACGGAGCUCAACCGAUCCGCAUCAUCCACGCCACUUAAAGUGAUUAUGAUUUGUGAAUCAACGGAUUUGAGAUUUGAACCUAGACAAGGAAGGGCUCUUGGAGCAACUGCUACAGUCAGCUGCUCUACUGGUUAGUUGGUCACUUGGCCGUCACUUGUCAGCUGUGGCCUCGGUGCCGGUGAAGUGACCUGCGCGGUGGACAAGUGCAAGGAGGAGCUGAGCAGGUGCCACGACUAGCACCGGUGGCACAAGGUGUGUGAGGCGCUCUCCAAGCUGCCCGUCGUUGUCGCCGAUUGCUAAGUAUGAUGGGGAUGAGGAGGAGCAGAGGUGGCCUAAAUCUGAUGGACAAGAUUUUGGCAGUUUGGGAAGCAUUUGGGAUAUGGCAGGCUCCAGAAUCCGUGGUUAAUUCAUUACCAUGUAAGAGCUACAAAAAGCAGACAGCCCAAUGCAGUGAUAACAUGGAACAGUGAGAUUCUUACCAUUCAAAUUUUAUCAUUUACUUGUUGUCACCUAGGGCCAAAAAUAGUUCUGAGUGUCAUUGAAGAAUGUCAAGUUCGCCGCUACAAAUGCAUCACAUUAUCUUACGCGUUUGAAAUAACUAUGCUGUUCAUGUCCAUUAUCCAUCAAAAAAUAAAUUGAGACCCUGUACAAAAUCCUUAUUAUUUUAUUUGCCUUACAUCAGCCUUCUAAUAUGGUUGUUGUAGUCAUUUUAGAGAUCUUAUCAAAUAAGCAUUUUGUCAUGGGCAUUGGGCCAAAGGCCAAGGUGUUUAGCGUUUUGGAUCAUGACACAUUUGGGGGCUAAUUCUGCCUUAACAAUAUUGUAUCUGUCAUAACGAGCUAGAACCAUGAAAUAUUUGGGGGCUAAUUCCGCCUUCAUGAUAUUAUAUCUAUCACAGUGGGCUAUCCUAAA
Sequence
(XR_001542910.2):
CCACUAACCCUAGCCAGCGCCGCCCCCUUGUCCCUCUUCCUCUCCCGCCGCCGAGAGCCGCGCGCGCCGCCGCCUCCGCCGUCCAGAGCCGCGCACGCCGCCGCGCGCCGCCACCCCCAUCGCCCGCCGCCGCCUUCGUCUCGCGCCGCCGCGCGCCGCCACCUCCGUCGCCCCCCGCCGCCAUCGUCGUCCCCGUCGCGCCGCCGCCUCCGCCUCCUCCUCGCGGCGCCGCCUCGCGCUACCACCGUCGGUCGCCGGCCCCCGCCACGACCCCUUCGUUAGCUACCGGAUCCGGCGCCGUCCGUCUCCACCGCCGUCGUAGAAAGCCCGUAGGCCACCUGUGUCCUCUUGCCGCCCGAUGUGACGAGGAGCUCGGCGGCGCCACACGGAGCUCAACCGAUCCGCAUCAUCCACGCCACUUAAAGUGAUUAUGAUUUGUGAAUCAACGGAUUUGAGAUUUGAACCUAGACAAGGAAGGGCUCUUGGAGCAACUGCUACAGUCAGCUGCUCUACUGGUUAGUUGGUCACUUGGCCGUCACUUGUCAGCUGUGGCCUCGGUGCCGGUGAAGUGACCUGCGCGGUGGACAAGUGCAAGGAGGAGCUGAGCAGGUGCCACGACUAGCACCGGUGGCACAAGGUGUGUGAGGCGCUCUCCAAGCUGCCCGUCGUUGUCGCCGAUUGCUAAGUAUGAUGGGGAUGAGGAGGAGCAGAGGUGGCCUAAAUCUGAUGGACAAGAUUUUGGCAGUUUGGGAAGCAUUUGGGAUAUGGCAGGCUCCAGAAUCCGUGGUUAAUUCAUUACCAUGUAAGAGCUACAAAAAGCAGACAGCCCAAUGCAGUGAUAACAUGGAACAGUCUAUUUUCUUCAUUUAGUAGACUCAGAAUCCAUUCCUCCAACAUCAUGACAGCAGCUACAGUACGUCUACUCAACUAUUGUCAUUUAAGCUGACGCUUUUAUUCAAUAUAACAAAUGUGGUACCAUGGCAAACCUGAAGCUAUAAGCAAUCUUGAACGCUGAAAAGAAAGAGUGAUGUAAACAGUAGCUACGAAAAUUACCAUACCAUCUAUCUCUUCAGUUUUGUUGUAAUGAUGUAAAAUCCAACAAUAAGUAUUUUAUUCACCCAUUUUACACUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.41%
ME_num:
MEP:
1.83%
HE_num:
HEP:
97.56%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.66
Avg Expression:
60.58
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.0105248302488 | 3.79100458163258e-06 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 3.40840124577064 | 7.79914756861457e-20 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.27259501001755 | 6.74583334075877e-11 |
| 4 | Azucena // root // control--/--Azucena // root // Al | -1.03252834475166 | 9.9619670928792e-07 |
| 5 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 3.68570443879815 | 7.98277098257481e-14 |