Chr:
Chr2
Start:
14025780
End:
14030289
Strand:
+
Ref_name:
LOC4329231
Sequence
(XR_001542982.2):
CCAACCGCGUGGCUUUCUCAAGUCCGAGUAGCCAACUUUGGCUAUGAGUUCCUGCUCUCAGGCGGGCCCCACACUCAUUGCUACAGGAAAGAGGGGCGAGGGGCGAGGCAGCCAACGGGGAGAGGAGCGGCGGCGCCGCGGGGCAGGUCGCCGGCGAGCUCGAUCUGCAACCGGCACCGUCGCUACUAGGGCCACCCGAUGUUGUCGUCGCUGCUCGGGCCGUCCCUCCACCCGGCGCCUCCGUCGGGACGGGGUCGACGUUGUUGCCGCUGCUCGGUACGGGGGGCGCCAGAUCUGAGUGCUGGUAGGAGAGGAGGCGGCGGGGUCGUCGCCGCUGCAUGCCGCCGGUGGGAGGAGAGGAGGGGGCGGGGGCUGGGGGGUCGUCGCCGUGUGCCGCCUCGUCGUCCCAGCGCCGGCGCUGCCCUCGCCGCCGCGCUCUGCCGACGGGUGUCGAAACAAGAAUUCGGCAAUAAUAAAAGGGGGUAGCGCAUGAGACCUAAAAGUGGAUGGGUGCGGAGACAAGGAUUUAGACAGGUUCAGGCCCUCUCAAUGAGGUCAGGACUAAGGCAAGCCAAAGAACCACAAUGAAGGAAAUGGAAUCUGACCGCCAUACUUGUUUGAAUAAAAAAAAAGGUGGUCUCAAGUUAUGCAUGGGUAAUUUAGGUUAUGUUUCUUGCACUACAAUUACGUAUAUGCUACUCUGACUUACUAACAAAUCAUGUAUACGAUAACUCAGAGUUUUGCUAUGUGAGCCAAAGGACUGAAGAGAUGAAGUUCUCAAAUUUGACUUCUAUGGACAACCUGCUUAAAUGAAAAAUGGCAGUAUUGUUAUAGCAGCCACCGUUAGAAGCACAAACACAUCACGGGUUGGUGCUUGGCGUGGCUGGUGAUGACGGAAUUGUGGCGAGAUCAAUAUAUGUUUGUGAUCAAUAAUUCUUAUAAGAGAUUCAAAAAGGAAGAAGGAAACCGAAGCGGAUUUGGUGUGGUAUCAAGUUUAUCUCCAAGACGGACUAAGCAUCAGCUAAAAAUUGGACAAAGGCUUGGCUUGGCCGGUACGAUAUAACUUGGGCUCGGCAUGGGCCUAGAUCAGGAUAACCGGCAUUGCCAAUCAGAGAUAGAGCUCAUGUAAGGCAAUUGUAUCUAUUAAUUAGGAUAGUUAUGUCAGUUUGUUAGAGAUUUGGUAAGAGACCACCGUAUAUGGUCUUGUUUGUAUUUUAUCUUUAGAAAGGUUCGAGUCGUGUCCAUAAUGGACUAAGUUUGUAUUCGGGGUAUAAAUAUGAACCCCAUAGCAUUGUAAUACGGGAGAUAAUCCAAUACAACUUUGGCGCAUCA
Sequence
(XR_001542983.2):
UAUUCCUUGCCACAUCAUCCAACCGCGUGGCUUUCUCAAGUCCGAGUAGCCAACUUUGGCUAUGAGUUCCUGCUCUCAGGCGGGCCCCACACUCAUUGCUACAGGAAAGAGGGGCGAGGGGCGAGGCAGCCAACGGGGAGAGGAGCGGCGGCGCCGCGGGGCAGGUCGCCGGCGAGCUCGAUCUGCAACCGGCACCGUCGCUACUAGGGCCACCCGAUGUUGUCGUCGCUGCUCGGGCCGUCCCUCCACCCGGCGCCUCCGUCGGGACGGGGUCGACGUUGUUGCCGCUGCUCGGUACGGGGGGCGCCAGAUCUGAGUGCUGGUAGGAGAGGAGGCGGCGGGGUCGUCGCCGCUGCAUGCCGCCGGUGGGAGGAGAGGAGGGGGCGGGGGCUGGGGGGUCGUCGCCGUGUGCCGCCUCGUCGUCCCAGCGCCGGCGCUGCCCUCGCCGCCGCGCUCUGCCGACGGGUGUCGAAACAAGAAUUCGGCAAUAAUAAAAGGGGGUAGCGCAUGAGACCUAAAAGUGGAUGGGUGCGGAGACAAGGAUUUAGACAGGUUCAGGCCCUCUCAAUGAGGUCAGGACUAAGGCAAGCCAAAGAACCACAAUGAAGGAAAUGGAAUCUGACCGCCAUACUUGUUUGAAUAAAAAAAAAGGUGGUCUCAAGUUAUGCAUGGGUAAUUUAGGUUAUGUUUCUUGCACUACAAUUACGUAUAUGCUACUCUGACUUACUAACAAAUCAUGUAUACGAUAACUCAGAGUUUUGCUAUGUGAGCCAAAGGACUGAAGAGAUGAAGUUCUCAAAUUUGACUUCUAUGGACAACCUGCUUAAAUGAAAAAUGGCAGUAUUGUUAUAGCAGCCACCGUUAGAAGCACAAACACAUCACGGGUUGGUGCUUGGCGUGGCUGGUGAUGACGGAAUUGUGGCGAGAUCAAUAUAUGUUUGUGAUCAAUAAUUCUUAUAAGAGGUAAUUCUCACAAGUACUCACAAGUAAAUCUAAAUUACUCAGAAAGAUAUUUCUAUUGAAAAUAGAGUAAUUAACAGAAUAAAAUAAACAUGAGAGGAUUACCGACAUCUCCGAAAUUCCUCCGAUUUCUUCUACUCUACUCUCUUCCUAAUUCUAGUAUACAAAAUAGUACAACAGAGCCUCUUAUAAUUCAGCUCAAGCUUGGAAGUGUGUGAAGAAGCGAAUGAGUGAAACUCCUUAAAUAGGCAGUUAAUGACGGUUGUGGAACGAGAAUUGUCCGAAGUGCCCUCCAACCGCCAUUAGGAUCAAAUCAGGAGCGUCCCUGCCAAACCCCAGGAUCAACGGUGGAGAUCAGGGUUCUGGGCUGGCCCAUCUGGCCCUCAAUUUUGGCCUGUGGACUCCUCCUGUUCUGCUUUAUCCAUUACUGUGAGUUUUGGGCUGAUUCUCUGGUAUUUUAGUAAAGUGUAAAGCCCCUCCCUUGUAUGGAUAUGUUCCUUCUUCACUUUAGACUGAUUUUUCUCCCAACUUCGGUGGUUUAGGACCUGCAUCAAUUAAACACCAACACUCGUGGAAUAUGUUAGAAUUAACACCUACCACUAUAUUGGAUGUUUUAUUAUAUGAGUUUUAUGCAAAUGCUGGCGGUAUAAAAAUGUGUAUUUAACAGCCGCCAACAAUCGGGAUUUCUCGAGUCCUAGUUGAUUUCUAAGCCUAAUUGGACGUGGGAAAGACCAUGGGAAGUAAGUCCACCCCUAAUAUAAAUAUAAGGGGGACAAGUUCGAUUGAAACAAUAACCACUCAAUCGUCAAACUCAAUUUAGUUAUCCAAACCCUCUAUAUUCUACAUCUCCCUCCUUGCUUCCAAUCCCAAGUAAAUUCUCCCCAAAUCCCCUAAUUGCUCGCCGCCUCUCGUCUCUACGGUGUUAAAGGACAUCCUAGCUGGCCUGCCGAGUCUAGCACAAACCAGAGCGCAUUCACCCUAACAGGGUCCCUCCUGGGUGUGUGUUCGGCAGCCUCUACCCACACCCUACAGCGGCACGUCUCCGGGUGAUUCCGCGGGUUGCACAUAACAUGCUCAAGUUGUGGCGGCGCGAUUCUACAUCAACAACAUGCACAUGCGUGAUCUACCUGUACAGGUACACAUCAACCAGUGACUGUUCUAGCCAGAAUCCACAAAGCAUAGAUGUUAACAACAAAAUUUGGUAAGAUACGUGGACAUAAGGAUGGAUCCGAAGCGGAUUUGAAGGAGUUAGUUUGGUUUCCAAAAUGAAACAAUGCAUCUGCUGGAGUCUGUAUCAGUCGAUAUAGAGUUGGAUUUGAUUAGUCGAUACAUACGAUUUCGAGUUCAUGAUGAGUUCGGAUUGAGGAUUCAGAAUUAUUGCCAUACAAGGAUAGAGUCCAAAGAAGCAAUUGCAUCUAUUAAUUAGGAUAAGAGUAAGCUUUCCUUUUUGUGUUUUAGAAAUCUAUAUUAGCAUCCACAAUGGGCUGGUGUGUUUAUUUUGUGAAGUUUGAAUCAUGUCCGAUAUGAACAAGUUUUGUACUACGAGUAUAAAUAUAUGCCCAGGGUCUUGUAUGAAGAACAACAACAGUUCAAUAUACUCUCAGUGCAUCGCCAAACUUUUUGUUUUCAAUUUUCUCAAUGAGUUCUUGUUUCGAGUUGGGGCAUCUUCUUCGAUCUUCCGAUGAGAGAUUCAAAAAGGAAGAAGGAAACCGAAGCGGAUUUGGUGUGGUAUCAAGUUUAUCUCCAAGACGGACUAAGCAUCAGCUAAAAAUUGGACAAAGGCUUGGCUUGGCCGGUACGAUAUAACUUGGGCUCGGCAUGGGCCUAGAUCAGGAUAACCGGCAUUGCCAAUCAGAGAUAGAGCUCAUGUAAGGCAAUUGUAUCUAUUAAUUAGGAUAGUUAUGUCAGUUUGUUAGAGAUUUGGUAAGAGACCACCGUAUAUGGUCUUGUUUGUAUUUUAUCUUUAGAAAGGUUCGAGUCGUGUCCAUAAUGGACUAAGUUUGUAUUCGGGGUAUAAAUAUGAACCCCAUAGCAUUGUAAUACGGGAGAUAAUCCAAUACAACUUUGGCGCAUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
41.46%
ME_num:
MEP:
40.85%
HE_num:
HEP:
17.48%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.71
Avg Expression:
5.39
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -7.81678005517118 | 9.0531519709958e-08 |
| 2 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -9.21781371112752 | 8.04073840893926e-11 |
| 3 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.09908310398023 | 0.00588137199490226 |
| 4 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.10283274202683 | 0.00588823924498403 |
| 5 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.10274453180595 | 0.00579057448014751 |
| 6 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.00499949105195 | 1.25282935222332e-10 |