RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC4329177

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

13002437

End:

13005252

Strand:

-

Ref_name:

LOC4329177

Sequence
(XR_001542790.1):

GUUUAUUCCAAUCUUCUCAGUCUCUCUAUUCCCCACGCUUUUUACAAGCGUCGGCUCACCUUUCCUUUUACUUUCUCUAUCGACAGCUCUAUCCCAGGAAGCCACAAAGCCAGCUAGCACCACCAUGGUUUUGCCUCCCUCUCGAACAGCUCCACAGCGAGGAUUUCUGGUGCUUGGUGAACAGUGUGUCCCCUUGUUGGCGACGUUGGAUCUGGAAGUGAGGGGUCAGAGGAGGAGCAUGCUGCCCAUCUCCACCGGAUCUGGCUGGACUCCCCUCUCCGGUGACCUCUCUCCCCAGGCGGCAGCGUUCAGAUCAGCCCCUCAGCAGACGUGAGGCGCGAGCCAUCGGCGGAGGGCUCCAUGGAGGCGGCGUCCUGGCCUCCUGGGGGUCGGCGGAGUGGCCUCGGCGACGGCGUAUCUUGUGCCGCUGGCACUCACCUCUCCCUCGCCAUCUUCCUCCGCCACCACUGCCCCUCCUCAUCGGACGACGAGCUUGAUGGUGGCGGCGCAAGAGCAAGCCAGGGUCAGUCGUUCCUUACACCCCUUGCCUUUGCCCCCCACUCUCGCCAGAUGGCGAGCUAGAUGGUGCCGGCGCCCCUGCUCUCCUUUCCUGGCCGGCCAUGAGGUGGGGUGGCAGAUUGGAAGAAGGGGGCGACAACCUCGACGACGGCUGCCCACAUCAGCGGUGGAGCGGAUCUAGAGUGGCCACGGGACAGUAUAGCAAUAUUGGAACCAAGGACUAUACAUCUAAAUUAUCAGUGUGCUGAGGUUCGUGAUAGUGCUCUGCUGAAGAAUGUGGAGAUUAUUGCAAAAAGACUCACUAAUGCAUCCGUGAUUUAAGGUACUUCUGGUAGCAUUGGAGUCUAUAAAAUUUCCCUACACAUCUUUGAUUUAAAAUAUUUUGCUUUAUGCAUGUGUAUAGAAUUGGAUCCUUUCUCAACAAUAAUAUAAGCUUAUGAACAUGAAAUUCUGAAAAAUCAUCAAGAUAUAUCUUUCUUAAUCUAAAGAGUUAUGAUGAUCAGGUCAAUUUUUUUUUCAGAAUUAAGUUCGGUUGCAUGGCUAAAUUGGAACCUAUUGUACUUGCUAUGCUCCGUUGUAAUGCUUUGGAAUUUUUAAGAGCUCCAUACGGAUAUCUGCUGAUGUGGAUUGGUAUAAGUGUUGGCUAUGACAUUGUUUUCAGGCAAUUGGCAAUGUCAUGCUGCAUUGCGAACCUUCUUAUUACCCUUUGAUGGGUUGGAGGUAUAGAAUCGAGAUGAUUGCCAAAAAUAUUCAGGUAAUUACUGCCAAUAAAUAAGAAUAAAAGCAGAGCAGACAUAAGGUAAAAAGAAAGCAGAAAGACAUUCAUCUAGUCGUGUUGUAUUUACUUGCUAGCAGUGUGGUUUUUAGAGCAUGAUUAAAAAUUGCAAUAAUUAAACGAUGGUUCAUCUGUCUGCACAGUUAAUGUUUUUCUGCAUAAAAUUGCUCUUGCUGCAAUUACCAAUACUUUUUCUUUCUUCUAGUAAUAUAUAAAGCCACUUAAAAAAGAGAUUUUCAUGUUUGGGUUUGCAACUCCUAGAUUUUGUGGUGGUAUGUCAUGAAAAUAGCCGCUGAACAACUAAAAAAUAUGCCUGUUGCUAACUUGCUAGUUUUAUUCAAUAUUAAUCUUAUAAAUCUAAUGAAAUUGAAAUUGCAUUCAGGGUUGAGUUCAUUGAUAACCUGGAAUCGACAUUGAUUGGAGGUGGCUUGACAUCCUAGAGGAAGAGCCUUGUGAUCUAUAUUUUCUUGUGUGCUUCUAUUAUUUGUAUUGCCUGUGAUCAUAUUUGUGUAUUUUGUCCUGCGAGAAAAAUCUAUAAAAUCACGUUAGUGGGAGUGCUAGCUAAAUAUAGCGGAAAGAAAAGCGGGAUAGAAUCUGACUCGGGAUAGAAUCUAACUCCUGACUUGGGCUGGGCAAACAGAAGCAGAAAACGGUGUGGGCGAACCAACCUGACUCGUAUGCGAUAUUGUUUUCUUGCGUGAACCUGGUAAACCUGGACUCUGGUUUUUCUAUAUUUUGUGUGUGACCUGGACUUCUGUGUUUUUUGUGCGUGAA

Sequence
(XR_001542791.1):

GUUUAUUCCAAUCUUCUCAGUCUCUCUAUUCCCCACGCUUUUUACAAGCGUCGGCUCACCUUUCCUUUUACUUUCUCUAUCGACAGCUCUAUCCCAGGAAGCCACAAAGCCAGCUAGCACCACCAUGGUUUUGCCUCCCUCUCGAACAGCUCCACAGCGAGGAUUUCUGGUGCUUGGUGAACAGUGUGUCCCCUUGUUGGCGACGUUGGAUCUGGAAGUGAGGGGUCAGAGGAGGAGCAUGCUGCCCAUCUCCACCGGAUCUGGCUGGACUCCCCUCUCCGGUGACCUCUCUCCCCAGGCGGCAGCGUUCAGAUCAGCCCCUCAGCAGACGUGAGGCGCGAGCCAUCGGCGGAGGGCUCCAUGGAGGCGGCGUCCUGGCCUCCUGGGGGUCGGCGGAGUGGCCUCGGCGACGGCGUAUCUUGUGCCGCUGGCACUCACCUCUCCCUCGCCAUCUUCCUCCGCCACCACUGCCCCUCCUCAUCGGACGACGAGCUUGAUGGUGGCGGCGCAAGAGCAAGCCAGGGUCAGUCGUUCCUUACACCCCUUGCCUUUGCCCCCCACUCUCGCCAGAUGGCGAGCUAGAUGGUGCCGGCGCCCCUGCUCUCCUUUCCUGGCCGGCCAUGAGGUGGGGUGGCAGAUUGGAAGAAGGGGGCGACAACCUCGACGACGGCUGCCCACAUCAGCGGUGGAGCGGAUCUAGAGUGGCCACGGGACAGUAUAGCAAUAUUGGAACCAAGGACUAUACAUCUAAAUUAUCAGUGUGCUGAGGUUCGUGAUAGUGCUCUGCUGAAGAAUGUGGAGAUUAUUGCAAAAAGACUCACUAAUGCAUCCGUGAUUUAAGGUACUUCUGGUAGCAUUGGAGUCUAUAAAAUUUCCCUACACAUCUUUGAUUUAAAAUAUUUUGCUUUAUGCAUGUGUAUAGAAUUGGAUCCUUUCUCAACAAUAAUAUAAGCUUAUGAACAUGAAAUUCUGAAAAAUCAUCAAGAUAUAUCUUUCUUAAUCUAAAGAGUUAUGAUGAUCAGGUCAAUUUUUUUUUCAGAAUUAAGUUCGGUUGCAUGGCUAAAUUGGAACCUAUUGUACUUGCUAUGCUCCGUUGUAAUGCUUUGGAAUUUUUAAGAGCUCCAUACGGAUAUCUGCUGAUGUGGAUUGGUAUAAGUGUUGGCUAUGACAUUGUUUUCAGGCAAUUGGCAAUGUCAUGCUGCAUUGCGAACCUUCUUAUUACCCUUUGAUGGGUUGGAGGUAUAGAAUCGAGAUGAUUGCCAAAAAUAUUCAGGGUUGAGUUCAUUGAUAACCUGGAAUCGACAUUGAUUGGAGGUGGCUUGACAUCCUAGAGGAAGAGCCUUGUGAUCUAUAUUUUCUUGUGUGCUUCUAUUAUUUGUAUUGCCUGUGAUCAUAUUUGUGUAUUUUGUCCUGCGAGAAAAAUCUAUAAAAUCACGUUAGUGGGAGUGCUAGCUAAAUAUAGCGGAAAGAAAAGCGGGAUAGAAUCUGACUCGGGAUAGAAUCUAACUCCUGACUUGGGCUGGGCAAACAGAAGCAGAAAACGGUGUGGGCGAACCAACCUGACUCGUAUGCGAUAUUGUUUUCUUGCGUGAACCUGGUAAACCUGGACUCUGGUUUUUCUAUAUUUUGUGUGUGACCUGGACUUCUGUGUUUUUUGUGCGUGAA

Sequence
(XR_001542792.1):

GUUUAUUCCAAUCUUCUCAGUCUCUCUAUUCCCCACGCUUUUUACAAGCGUCGGCUCACCUUUCCUUUUACUUUCUCUAUCGACAGCUCUAUCCCAGGAAGCCACAAAGCCAGCUAGCACCACCAUGGUUUUGCCUCCCUCUCGAACAGCUCCACAGCGAGGAUUUCUGGUGCUUGGUGAACAGUGUGUCCCCUUGUUGGCGACGUUGGAUCUGGAAGUGAGGGGUCAGAGGAGGAGCAUGCUGCCCAUCUCCACCGGAUCUGGCUGGACUCCCCUCUCCGGUGACCUCUCUCCCCAGGCGGCAGCGUUCAGAUCAGCCCCUCAGCAGACGUGAGGCGCGAGCCAUCGGCGGAGGGCUCCAUGGAGGCGGCGUCCUGGCCUCCUGGGGGUCGGCGGAGUGGCCUCGGCGACGGCGUAUCUUGUGCCGCUGGCACUCACCUCUCCCUCGCCAUCUUCCUCCGCCACCACUGCCCCUCCUCAUCGGACGACGAGCUUGAUGGUGGCGGCGCAAGAGCAAGCCAGGGUCAGUCGUUCCUUACACCCCUUGCCUUUGCCCCCCACUCUCGCCAGAUGGCGAGCUAGAUGGUGCCGGCGCCCCUGCUCUCCUUUCCUGGCCGGCCAUGAGGUGGGGUGGCAGAUUGGAAGAAGGGGGCGACAACCUCGACGACGGCUGCCCACAUCAGCGGUGGAGCGGAUCUAGAGUGGCCACGGGACAGUAUAGCAAUAUUGGAACCAAGGACUAUACAUCUAAAUUAUCAGUGUGCUGAGGUUCGUGAUAGUGCUCUGCUGAAGAAUGUGGAGAUUAUUGCAAAAAGACUCACUAAUGCAUCCGUGAUUUAAGGCAAUUGGCAAUGUCAUGCUGCAUUGCGAACCUUCUUAUUACCCUUUGAUGGGUUGGAGGUAUAGAAUCGAGAUGAUUGCCAAAAAUAUUCAGGGUUGAGUUCAUUGAUAACCUGGAAUCGACAUUGAUUGGAGGUGGCUUGACAUCCUAGAGGAAGAGCCUUGUGAUCUAUAUUUUCUUGUGUGCUUCUAUUAUUUGUAUUGCCUGUGAUCAUAUUUGUGUAUUUUGUCCUGCGAGAAAAAUCUAUAAAAUCACGUUAGUGGGAGUGCUAGCUAAAUAUAGCGGAAAGAAAAGCGGGAUAGAAUCUGACUCGGGAUAGAAUCUAACUCCUGACUUGGGCUGGGCAAACAGAAGCAGAAAACGGUGUGGGCGAACCAACCUGACUCGUAUGCGAUAUUGUUUUCUUGCGUGAACCUGGUAAACCUGGACUCUGGUUUUUCUAUAUUUUGUGUGUGACCUGGACUUCUGUGUUUUUUGUGCGUGAA

Sequence
(XR_001542793.1):

GUUUAUUCCAAUCUUCUCAGUCUCUCUAUUCCCCACGCUUUUUACAAGCGUCGGCUCACCUUUCCUUUUACUUUCUCUAUCGACAGCUCUAUCCCAGGAAGCCACAAAGCCAGCUAGCACCACCAUGGUUUUGCCUCCCUCUCGAACAGCUCCACAGCGAGGAUUUCUGGUGCUUGGUGAACAGUGUGUCCCCUUGUUGGCGACGUUGGAUCUGGAAGUGAGGGGUCAGAGGAGGAGCAUGCUGCCCAUCUCCACCGGAUCUGGCUGGACUCCCCUCUCCGGUGACCUCUCUCCCCAGGCGGCAGCGUUCAGAUCAGCCCCUCAGCAGACGUGAGGCGCGAGCCAUCGGCGGAGGGCUCCAUGGAGGCGGCGUCCUGGCCUCCUGGGGGUCGGCGGAGUGGCCUCGGCGACGGCGUAUCUUGUGCCGCUGGCACUCACCUCUCCCUCGCCAUCUUCCUCCGCCACCACUGCCCCUCCUCAUCGGACGACGAGCUUGAUGGUGGCGGCGCAAGAGCAAGCCAGGGUCAGUCGUUCCUUACACCCCUUGCCUUUGCCCCCCACUCUCGCCAGAUGGCGAGCUAGAUGGUGCCGGCGCCCCUGCUCUCCUUUCCUGGCCGGCCAUGAGGUGGGGUGGCAGAUUGGAAGAAGGGGGCGACAACCUCGACGACGGCUGCCCACAUCAGCGGUGGAGCGGAUCUAGAGUGGCCACGGGACAGUAUAGCAAUAUUGGAACCAAGGACUAUACAUCUAAAUUAUCAGUGUGCUGAGGUUCGUGAUAGUGCUCUGCUGAAGAAUGUGGAGAUUAUUGCAAAAAGACUCACUAAUGCAUCCGUGAUUUAAGAAUUAAGUUCGGUUGCAUGGCUAAAUUGGAACCUAUUGUACUUGCUAUGCUCCGUUGUAAUGCUUUGGAAUUUUUAAGAGCUCCAUACGGAUAUCUGCUGAUGUGGAUUGGUAUAAGUGUUGGCUAUGACAUUGUUUUCAGGCAAUUGGCAAUGUCAUGCUGCAUUGCGAACCUUCUUAUUACCCUUUGAUGGGUUGGAGGUAUAGAAUCGAGAUGAUUGCCAAAAAUAUUCAGGUAAUUACUGCCAAUAAAUAAGAAUAAAAGCAGAGCAGACAUAAGGUAAAAAGAAAGCAGAAAGACAUUCAUCUAGUCGUGUUGUAUUUACUUGCUAGCAGUGUGGUUUUUAGAGCAUGAUUAAAAAUUGCAAUAAUUAAACGAUGGUUCAUCUGUCUGCACAGUUAAUGUUUUUCUGCAUAAAAUUGCUCUUGCUGCAAUUACCAAUACUUUUUCUUUCUUCUAGUAAUAUAUAAAGCCACUUAAAAAAGAGAUUUUCAUGUUUGGGUUUGCAACUCCUAGAUUUUGUGGUGGUAUGUCAUGAAAAUAGCCGCUGAACAACUAAAAAAUAUGCCUGUUGCUAACUUGCUAGUUUUAUUCAAUAUUAAUCUUAUAAAUCUAAUGAAAUUGAAAUUGCAUUCAGGGUUGAGUUCAUUGAUAACCUGGAAUCGACAUUGAUUGGAGGUGGCUUGACAUCCUAGAGGAAGAGCCUUGUGAUCUAUAUUUUCUUGUGUGCUUCUAUUAUUUGUAUUGCCUGUGAUCAUAUUUGUGUAUUUUGUCCUGCGAGAAAAAUCUAUAAAAUCACGUUAGUGGGAGUGCUAGCUAAAUAUAGCGGAAAGAAAAGCGGGAUAGAAUCUGACUCGGGAUAGAAUCUAACUCCUGACUUGGGCUGGGCAAACAGAAGCAGAAAACGGUGUGGGCGAACCAACCUGACUCGUAUGCGAUAUUGUUUUCUUGCGUGAACCUGGUAAACCUGGACUCUGGUUUUUCUAUAUUUUGUGUGUGACCUGGACUUCUGUGUUUUUUGUGCGUGAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

0

LEP:

0.0%

ME_num:

14

MEP:

2.85%

HE_num:

477

HEP:

96.95%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

caryopsis

Tau :

0.62

Avg Expression:

36.38

Tip: OSA-LNC4329177 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN1.100628083224171.70836704456383e-08
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN1.316719565682437.31569228694572e-13
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1.166036590343577.31089754868526e-12
4Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN1.777187287316331.56232823304173e-26
5Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min"1.691459207127351.45877146316683e-30
6Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA1.607683556866051.68229703646705e-18
7Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"2.238214557809551.43976760918986e-73
8IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA)1.928859812252496.50790214053338e-34
9Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2"1.88398472169421.43365845344869e-12
10Nipponbare // leaf // control--/--Nipponbare // leaf // drought1.883896046570121.65545820591324e-12
11Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1"1.883789538772731.49148459583331e-12