Chr:
Chr2
Start:
11427001
End:
11431306
Strand:
-
Ref_name:
LOC4329083
Sequence
(XR_001543628.2):
ACUUUUUCCUUGACCACCUUAUCCAACUCCUUGUGCGAUUGAGCCCAACCCCAGCAGCGAGCGCAACGGCAACGCCUUGUUGGCGACCGGCCGCCGCCGCCGCCCGCCGGCGGCCGGGCGGCCAGCGGGGGGUGGCUGAUGAGGGCUCCGCUGGGCGGCCAGCAUAUGGGGGUGCGGGCGCCACAGUCCGUAGAAGCGCGGGGAGGCUGCGACUGGGUAGCCAGGCGCGUGGAGCGGUGGAGGCAAGCGGCGGCCGGUGGGGGAGGCGGCUGCGUGCGCUCGGUGUCUGCGUCGCAUCGAGCAUUCGAGCUGGUGGAAGGAGCCUAUCGAGGAGCUGAGCAAGCGAGCUGUGGUUCUCGAUUACUGAUUUCCUGGUGGCUGAAAAUCAGCGACGGAAGGUAUCUCAAAGAGAUUUGAAUAGCUAUUUUAACCGUGGGUGAUGUGCCACCAACCCCAACUACUUGUGGUAAUGGAAUUGUUGCGGUGGAAGAGGCUGGUGAACAGGUAGAAGAGGUGGAAGUACAAUUGGGUUCAUUUCAUAUUGCUUGACGAGCUGAACAGGGAAAAGCUAGGUCCUGUGUGUGCUCAUCUCCUGGUAGAUUAAUUCAGAGUUUCAGAAUUCAACACUUGGGGCGGCGUCCAACUCUAAUUAAUGUGUUCUAAGGAAAAAUAUCUCAAGUGCUGAACAGGACUGGGUGUACCUGACAAUUAUAGAAGUGUUGAUGUAGAAACUUUGUGGAGAAAUGGUGCCAAAGUUUGAUUAGUUUGGUUUGACCUUGUAGAGAACUCAACGUCCAGUGGCUACUGCCUAGUGAAUCCAAGUGAAGAUGCACCUGUUAUCCAGGCUUUGGUUCAGGGAGAAAAGUUGGGUGUUCUUGCUUGCAAGUUGUUGUGUACCGUCUAUACAGUAGACUUUAGUUAUUUGAUUUGCAGACAAUUUAGCUUCGGUUUCAUUAACUCAGGCAGCAAUUUCAACCUGCAUGUCCAUUAAUUAUCUAUUUGUAGUGCUUGUUAUAUCA
Sequence
(XR_003240909.1):
GUACUUUUUCCUUGACCACCUUAUCCAACUCCUUGUGCGAUUGAGCCCAACCCCAGCAGCGAGCGCAACGGCAACGCCUUGUUGGCGACCGGCCGCCGCCGCCGCCCGCCGGCGGCCGGGCGGCCAGCGGGGGGUGGCUGAUGAGGGCUCCGCUGGGCGGCCAGCAUAUGGGGGUGCGGGCGCCACAGUCCGUAGAAGCGCGGGGAGGCUGCGACUGGGUAGCCAGGCGCGUGGAGCGGUGGAGGCAAGCGGCGGCCGGUGGGGGAGGCGGCUGCGUGCGCUCGGUGUCUGCGUCGCAUCGAGCAUUCGAGCUGGUGGAAGGAGCCUAUCGAGGAGCUGAGCAAGCGAGCUGUGGUUCUCGAUUACUGAUUUCCUGGUGGCUGAAAAUCAGCGACGGAAGGUAUCUCAAAGAGAUUUGAAUAGCUAUUUUAACCGUGGGUGAUGUGCCACCAACCCCAACUACUUGUGGUAAUGGAAUUGUUGCGGUGGAAGAGGCUGGUGAACAGGUAGAAGAGGUGGAAGUACAAUUGGGUUCAUUUCAUAUUGCUUGACGAGCUGAACAGGUAAUCUAAGCAUGUUUGCAUGCGGAUUAAUUUUAGUUGUUGGUCUAUUUAGUGUCAUAUAAACGAUGUAGUCGCAUUUGUGUUUAGGCGAAGUUGUUUUCGGUUUUAUUGUUGAUCUUCUCUGCGGCACCCGGGCACACCUCAGAUUCUUACCAUCCUCCACCACCACGGACAGAUAUCAAUGUUUCAACGGGCUCGGCCCUCUAAUUAUUUAGAUUUUGUUUAAACAAACUAUGUAAUAUAGGAAUGACGGUAAUAUAUAUAUUUGCCGGUUGCCGUCAGUCUUGAUUAGCAUCGUUGGGACUAGGGAGCCCACAAGAUCAAAGAGUUAUAUAGAACUCAUACUCCAGUUCCUUGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
4.47%
HE_num:
HEP:
95.33%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.58
Avg Expression:
34.07
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.25262043263999 | 0.0143780551115373 |
| 2 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.25254330007551 | 0.0146005615359413 |
| 3 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.25247689347143 | 0.014434397420913 |
| 4 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.01742712138384 | 1.4132975520598e-17 |