OSA-LNC4328919


Function Link


Basic Info

Chr:

Chr2

Start:

8833622

End:

8838493

Strand:

-

Ref_name:

LOC4328919

Sequence
(XR_001542879.2):

CCGUUCCGACGAGCGGGACCCACCCACCCAUCCCCGCCGCCGUCCCCACCCACCGCCGCCGUCGAUGGAGGGUUCCCCGGAGGCGGCGGAUCGGCUGGAUCCGGGCGCCGUUUCGGGCUCGAUCCGGCCGGUGACGAGCUUGCCGAGGAGGAUGAAGACGAGAGAUUAGGGGGAUCGAGAUGGAUGCCGAGAUCCGAUCUAGGCUGGCGCUGCGCCUGCGAGAUCUGAUCGCGAGCUAACCCUAUGGAAGCUUAAGAUGAAUUUGCAUACCUGGAUCAACUCCAUCGGUGUUGGGCGAGUCAUGUGGUGCGAUGAUCAUCAUGUUGGUUAUGACCACAUUGCUGGGUGUAGAAAAUGAAUUGGAUCAGUAUUUCAGCAUAAAUGGGCAUUUGAAACUGAACAUUCUCAAGAAUUUUGUAGCUGUGUCACAAGAUUUCUUAUUUCUGGAAGGAGAUGAACAUUUCAACUUUCAAGCGUGUGCUUACUCGCAAUAAACAGGAUGGAUGUUCCAGAAGGGUGAAUUCUUGAGAACAAUGUUGGAGAUGUGAAUGCCACUGGAAUGCAUGAAUUCCAGAAGGUUGGGCCUGGAACAGUCAGAGAAAAUUGCUACAGACGAAAUAAGAGCACAGUUAGUUCAGUUGCCUGGUGAGAGUAAGCCUGACUGCUUGUUGUCUGCUUGAGCAUAUAAUGCUGGCUUAAACCAGUCACCAACUUAAUAGUAGAAGUGAUGUAAACUGUACCAGAGUGGUACAGAAUCAAAUCAGUUCACUGUUCCAUUUCCUGUUCUUGGCAUGCAUGUACAUCCACUAGAUAUGGAACAGGAGCAAGAUUCAACUUUACCGACAACAGGUCGUCCACCGUGCUACCCACCAAGAAUUCUUUUUUGCAGGAUGUAUGCAUGUCUCUUUGAAUAUUCUCUGACCAGGAGACCAAAGUUAGUUGGUUGAGACUUAAGAAUUGACAAUCAAGACCAUCACAAGAACACAGUAUACCAAAACAACAGGGGAGAAAGUGAGCAGCAGAGAAGCUACCACCAUGCAACAACUAGAAAUACCGGAGCUGAGCUAAGCUGAGCUUCAAUUCUUCACCUGUAAUCACGAUGUCGCGGAGGCCGUCGCCGUGGAUGAAGCUGGUGUACCUCGCCCCCGGCAGCUCCCUCCCCCUUCCGUACGACGGCAGCGGCUCCGCCAGCGGCCAGCUCCUCGUCUCCUGCGUCGAUGUCAACGACACCACUCACCACCAAGAAGAAGAGAGGAAAAGAAAAACAUGGCCAUGGCGGUGGCGAGGUGAGAGUGAGACCUGUGUGGCCUUGAGGACGGCGCCCCUGGCGAGGAAGAGGGUCAUGUGGCUGGUGAGGUUGAAGCUGCCGGUGAGCCACGUUCCGGCCGGCACGAGCAGCGUGGUGCCGCCGCGGCGGCGCUGGUGCUGGAUGCGGUACACUGCCUUGUGGAACGCCCACGUGUUCACCGUCCGGCCGUCGCCCACGCCGCCGAACUCGGCGAUGGACACCGUCUCCGGCCGUGGCCUCGCCGGCACCGCACCGGCGCACGUCGUCGCCUCCGCCGCGUCACAUUGCACCAACAACACCACCAGUAGCACGGUGACCGCGAAGCCAUGCCCAUGCAACGCGGCCAUCAAAGAAAAAAUGAGAGGAAAUUGUUUGCGGCUAAACUAAAGAGAGAGAGGCCAAGCAGAGAGCUCCAAGAAGAGCUUUUUUCUACCGGUGUUUGUGUGAUCCCUAUAGGAGAAAGGUGGCCAAAUCCUGAGCUUAACAAUGCUGAGAGUGAGGGUUGAAGAGAGGAAGGCAAAGCAAAGCUAUAGCUUGCUCCCAAGUGCAAGAAUCCAAGGGUGGUGUGAGGAGAGCCAAGCAGAUGAGUCCAGAGGAUGGGAUGGGGUGGCUCAGCUUUGGAGCAAACCUGUGACUCGCUAGCUCACUUACUCUCUUGUGAGUGUGAGUGUGAGUGAAGAGAAGAAAGAAAAUGGAGAAUGUCUUGUGAAAGAGAGCCAGUUUUGGUCUCCAGUGAAAGCAGUGAAGCUUUUAUUCAGAUCUUGCAUGCUCAUAUAUAAUGGCUGCUCCAUUUCGCAAUUUUCAACUCAGGUGUGUCAGAAUGGUAAAAAUAAAAAUCAAAAUUUCUCCCAUGCUGUUAGUAAGGUAAUCUCCUUCCUUUUAUUUGAAAGCUAGGCAGGUGUUCUACCGAGAUGAAAUGCAAAGGGAAUUUCUUGCUUAAUUAACAUGACAGUCAUGCGGUUGAUCUACCACCAGAUUUGGCGUAGAGGCAGGGGCCCUUCAUUUGCUGCUUUUUUAUCAUCUUCUUUUUUCUUGCGUUUCAUUGCAUCUAAUGCUUUCUCAUCGUGGUACAUAAUUAAAGCCAUUGGGAUCGUGAGCAAAGGUAGAAGAAACAUGCUUUAUCAGCAUGGCAUGGACCAAAUUAAAAGAUCUCUACAUGCACUCCAGCUGGUAUUAUGUUUUGAACGUAUAUACAUGGGCAAAAUAUGGACUUCUGCCAUGUAGAUUGUAGAAUUUAAAUUCAGUCAGGUGUAAGAUGACUGAGUUGUUAUACAUUGUACAUACGUACUAAUACUCCCUCCGUUUUUUAAUAGAUGACGCCGUUGAUUUUUUCUCA

Sequence
(XR_001542880.2):

CCCGUUCCGACGAGCGGGACCCACCCACCCAUCCCCGCCGCCGUCCCCACCCACCGCCGCCGUCGAUGGAGGGUUCCCCGGAGGCGGCGGAUCGGCUGGAUCCGGGCGCCGUUUCGGGCUCGAUCCGGCCGGUGACGAGCUUGCCGAGGAGGAUGAAGACGAGAGAUUAGGGGGAUCGAGAUGGAUGCCGAGAUCCGAUCUAGGCUGGCGCUGCGCCUGCGAGAUCUGAUCGCGAGCUAACCCUAUGGCUUAAGAUGAAUUUGCAUACCUGGAUCAACUCCAUCGGUGUUGGGCGAGUCAUGUGGUGCGAUGAUCAUCAUGUUGGUUAUGACCACAUUGCUGGGUGUAGAAAAUGAAUUGGAUCAGUAUUUCAGCAUAAAUGGGCAUUUGAAACUGAACAUUCUCAAGAAUUUUGUAGCUGUGUCACAAGAUUUCUUAUUUCUGGAAGGAGAUGAACAUUUCAACUUUCAAGCGUGUGCUUACUCGCAAUAAACAGGAUGGAUGUUCCAGAAGGGUGAAUUCUUGAGAACAAUGUUGGAGAUGUGAAUGCCACUGGAAUGCAUGAAUUCCAGAAGGUUGGGCCUGGAACAGUCAGAGAAAAUUGCUACAGACGAAAUAAGAGCACAGUUAGUUCAGUUGCCUGGUGAGAGUAAGCCUGACUGCUUGUUGUCUGCUUGAGCAUAUAAUGCUGGCUUAAACCAGUCACCAACUUAAUAGUAGAAGUGAUGUAAACUGUACCAGAGUGGUACAGAAUCAAAUCAGUUCACUGUUCCAUUUCCUGUUCUUGGCAUGCAUGUACAUCCACUAGAUAUGGAACAGGAGCAAGAUUCAACUUUACCGACAACAGGUCGUCCACCGUGCUACCCACCAAGAAUUCUUUUUUGCAGGAUGUAUGCAUGUCUCUUUGAAUAUUCUCUGACCAGGAGACCAAAGUUAGUUGGUUGAGACUUAAGAAUUGACAAUCAAGACCAUCACAAGAACACAGUAUACCAAAACAACAGGGGAGAAAGUGAGCAGCAGAGAAGCUACCACCAUGCAACAACUAGAAAUACCGGAGCUGAGCUAAGCUGAGCUUCAAUUCUUCACCUGUAAUCACGAUGUCGCGGAGGCCGUCGCCGUGGAUGAAGCUGGUGUACCUCGCCCCCGGCAGCUCCCUCCCCCUUCCGUACGACGGCAGCGGCUCCGCCAGCGGCCAGCUCCUCGUCUCCUGCGUCGAUGUCAACGACACCACUCACCACCAAGAAGAAGAGAGGAAAAGAAAAACAUGGCCAUGGCGGUGGCGAGGUGAGAGUGAGACCUGUGUGGCCUUGAGGACGGCGCCCCUGGCGAGGAAGAGGGUCAUGUGGCUGGUGAGGUUGAAGCUGCCGGUGAGCCACGUUCCGGCCGGCACGAGCAGCGUGGUGCCGCCGCGGCGGCGCUGGUGCUGGAUGCGGUACACUGCCUUGUGGAACGCCCACGUGUUCACCGUCCGGCCGUCGCCCACGCCGCCGAACUCGGCGAUGGACACCGUCUCCGGCCGUGGCCUCGCCGGCACCGCACCGGCGCACGUCGUCGCCUCCGCCGCGUCACAUUGCACCAACAACACCACCAGUAGCACGGUGACCGCGAAGCCAUGCCCAUGCAACGCGGCCAUCAAAGAAAAAAUGAGAGGAAAUUGUUUGCGGCUAAACUAAAGAGAGAGAGGCCAAGCAGAGAGCUCCAAGAAGAGCUUUUUUCUACCGGUGUUUGUGUGAUCCCUAUAGGAGAAAGGUGGCCAAAUCCUGAGCUUAACAAUGCUGAGAGUGAGGGUUGAAGAGAGGAAGGCAAAGCAAAGCUAUAGCUUGCUCCCAAGUGCAAGAAUCCAAGGGUGGUGUGAGGAGAGCCAAGCAGAUGAGUCCAGAGGAUGGGAUGGGGUGGCUCAGCUUUGGAGCAAACCUGUGACUCGCUAGCUCACUUACUCUCUUGUGAGUGUGAGUGUGAGUGAAGAGAAGAAAGAAAAUGGAGAAUGUCUUGUGAAAGAGAGCCAGUUUUGGUCUCCAGUGAAAGCAGUGAAGCUUUUAUUCAGAUCUUGCAUGCUCAUAUAUAAUGGCUGCUCCAUUUCGCAAUUUUCAACUCAGGUGUGUCAGAAUGGUAAAAAUAAAAAUCAAAAUUUCUCCCAUGCUGUUAGUAAGGUAAUCUCCUUCCUUUUAUUUGAAAGCUAGGCAGGUGUUCUACCGAGAUGAAAUGCAAAGGGAAUUUCUUGCUUAAUUAACAUGACAGUCAUGCGGUUGAUCUACCACCAGAUUUGGCGUAGAGGCAGGGGCCCUUCAUUUGCUGCUUUUUUAUCAUCUUCUUUUUUCUUGCGUUUCAUUGCAUCUAAUGCUUUCUCAUCGUGGUACAUAAUUAAAGCCAUUGGGAUCGUGAGCAAAGGUAGAAGAAACAUGCUUUAUCAGCAUGGCAUGGACCAAAUUAAAAGAUCUCUACAUGCACUCCAGCUGGUAUUAUGUUUUGAACGUAUAUACAUGGGCAAAAUAUGGACUUCUGCCAUGUAGAUUGUAGAAUUUAAAUUCAGUCAGGUGUAAGAUGACUGAGUUGUUAUACAUUGUACAUACGUACUAAUACUCCCUCCGUUUUUUAAUAGAUGACGCCGUUGAUUUUUUCUCA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

104

LEP:

21.14%

ME_num:

377

MEP:

76.63%

HE_num:

10

HEP:

2.03%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

caryopsis

Tau :

0.69

Avg Expression:

6.16

Tip: OSA-LNC4328919 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN1.122390296425850.00806762504054724
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN1.718314625950313.71103296998433e-06
3Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA1.198792409257990.00141960653234732
4Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA1.623930234101641.87054958105437e-05
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-1.896970040402680.00362038938514131