Chr:
Chr2
Start:
8833622
End:
8838493
Strand:
-
Ref_name:
LOC4328919
Sequence
(XR_001542879.2):
CCGUUCCGACGAGCGGGACCCACCCACCCAUCCCCGCCGCCGUCCCCACCCACCGCCGCCGUCGAUGGAGGGUUCCCCGGAGGCGGCGGAUCGGCUGGAUCCGGGCGCCGUUUCGGGCUCGAUCCGGCCGGUGACGAGCUUGCCGAGGAGGAUGAAGACGAGAGAUUAGGGGGAUCGAGAUGGAUGCCGAGAUCCGAUCUAGGCUGGCGCUGCGCCUGCGAGAUCUGAUCGCGAGCUAACCCUAUGGAAGCUUAAGAUGAAUUUGCAUACCUGGAUCAACUCCAUCGGUGUUGGGCGAGUCAUGUGGUGCGAUGAUCAUCAUGUUGGUUAUGACCACAUUGCUGGGUGUAGAAAAUGAAUUGGAUCAGUAUUUCAGCAUAAAUGGGCAUUUGAAACUGAACAUUCUCAAGAAUUUUGUAGCUGUGUCACAAGAUUUCUUAUUUCUGGAAGGAGAUGAACAUUUCAACUUUCAAGCGUGUGCUUACUCGCAAUAAACAGGAUGGAUGUUCCAGAAGGGUGAAUUCUUGAGAACAAUGUUGGAGAUGUGAAUGCCACUGGAAUGCAUGAAUUCCAGAAGGUUGGGCCUGGAACAGUCAGAGAAAAUUGCUACAGACGAAAUAAGAGCACAGUUAGUUCAGUUGCCUGGUGAGAGUAAGCCUGACUGCUUGUUGUCUGCUUGAGCAUAUAAUGCUGGCUUAAACCAGUCACCAACUUAAUAGUAGAAGUGAUGUAAACUGUACCAGAGUGGUACAGAAUCAAAUCAGUUCACUGUUCCAUUUCCUGUUCUUGGCAUGCAUGUACAUCCACUAGAUAUGGAACAGGAGCAAGAUUCAACUUUACCGACAACAGGUCGUCCACCGUGCUACCCACCAAGAAUUCUUUUUUGCAGGAUGUAUGCAUGUCUCUUUGAAUAUUCUCUGACCAGGAGACCAAAGUUAGUUGGUUGAGACUUAAGAAUUGACAAUCAAGACCAUCACAAGAACACAGUAUACCAAAACAACAGGGGAGAAAGUGAGCAGCAGAGAAGCUACCACCAUGCAACAACUAGAAAUACCGGAGCUGAGCUAAGCUGAGCUUCAAUUCUUCACCUGUAAUCACGAUGUCGCGGAGGCCGUCGCCGUGGAUGAAGCUGGUGUACCUCGCCCCCGGCAGCUCCCUCCCCCUUCCGUACGACGGCAGCGGCUCCGCCAGCGGCCAGCUCCUCGUCUCCUGCGUCGAUGUCAACGACACCACUCACCACCAAGAAGAAGAGAGGAAAAGAAAAACAUGGCCAUGGCGGUGGCGAGGUGAGAGUGAGACCUGUGUGGCCUUGAGGACGGCGCCCCUGGCGAGGAAGAGGGUCAUGUGGCUGGUGAGGUUGAAGCUGCCGGUGAGCCACGUUCCGGCCGGCACGAGCAGCGUGGUGCCGCCGCGGCGGCGCUGGUGCUGGAUGCGGUACACUGCCUUGUGGAACGCCCACGUGUUCACCGUCCGGCCGUCGCCCACGCCGCCGAACUCGGCGAUGGACACCGUCUCCGGCCGUGGCCUCGCCGGCACCGCACCGGCGCACGUCGUCGCCUCCGCCGCGUCACAUUGCACCAACAACACCACCAGUAGCACGGUGACCGCGAAGCCAUGCCCAUGCAACGCGGCCAUCAAAGAAAAAAUGAGAGGAAAUUGUUUGCGGCUAAACUAAAGAGAGAGAGGCCAAGCAGAGAGCUCCAAGAAGAGCUUUUUUCUACCGGUGUUUGUGUGAUCCCUAUAGGAGAAAGGUGGCCAAAUCCUGAGCUUAACAAUGCUGAGAGUGAGGGUUGAAGAGAGGAAGGCAAAGCAAAGCUAUAGCUUGCUCCCAAGUGCAAGAAUCCAAGGGUGGUGUGAGGAGAGCCAAGCAGAUGAGUCCAGAGGAUGGGAUGGGGUGGCUCAGCUUUGGAGCAAACCUGUGACUCGCUAGCUCACUUACUCUCUUGUGAGUGUGAGUGUGAGUGAAGAGAAGAAAGAAAAUGGAGAAUGUCUUGUGAAAGAGAGCCAGUUUUGGUCUCCAGUGAAAGCAGUGAAGCUUUUAUUCAGAUCUUGCAUGCUCAUAUAUAAUGGCUGCUCCAUUUCGCAAUUUUCAACUCAGGUGUGUCAGAAUGGUAAAAAUAAAAAUCAAAAUUUCUCCCAUGCUGUUAGUAAGGUAAUCUCCUUCCUUUUAUUUGAAAGCUAGGCAGGUGUUCUACCGAGAUGAAAUGCAAAGGGAAUUUCUUGCUUAAUUAACAUGACAGUCAUGCGGUUGAUCUACCACCAGAUUUGGCGUAGAGGCAGGGGCCCUUCAUUUGCUGCUUUUUUAUCAUCUUCUUUUUUCUUGCGUUUCAUUGCAUCUAAUGCUUUCUCAUCGUGGUACAUAAUUAAAGCCAUUGGGAUCGUGAGCAAAGGUAGAAGAAACAUGCUUUAUCAGCAUGGCAUGGACCAAAUUAAAAGAUCUCUACAUGCACUCCAGCUGGUAUUAUGUUUUGAACGUAUAUACAUGGGCAAAAUAUGGACUUCUGCCAUGUAGAUUGUAGAAUUUAAAUUCAGUCAGGUGUAAGAUGACUGAGUUGUUAUACAUUGUACAUACGUACUAAUACUCCCUCCGUUUUUUAAUAGAUGACGCCGUUGAUUUUUUCUCA
Sequence
(XR_001542880.2):
CCCGUUCCGACGAGCGGGACCCACCCACCCAUCCCCGCCGCCGUCCCCACCCACCGCCGCCGUCGAUGGAGGGUUCCCCGGAGGCGGCGGAUCGGCUGGAUCCGGGCGCCGUUUCGGGCUCGAUCCGGCCGGUGACGAGCUUGCCGAGGAGGAUGAAGACGAGAGAUUAGGGGGAUCGAGAUGGAUGCCGAGAUCCGAUCUAGGCUGGCGCUGCGCCUGCGAGAUCUGAUCGCGAGCUAACCCUAUGGCUUAAGAUGAAUUUGCAUACCUGGAUCAACUCCAUCGGUGUUGGGCGAGUCAUGUGGUGCGAUGAUCAUCAUGUUGGUUAUGACCACAUUGCUGGGUGUAGAAAAUGAAUUGGAUCAGUAUUUCAGCAUAAAUGGGCAUUUGAAACUGAACAUUCUCAAGAAUUUUGUAGCUGUGUCACAAGAUUUCUUAUUUCUGGAAGGAGAUGAACAUUUCAACUUUCAAGCGUGUGCUUACUCGCAAUAAACAGGAUGGAUGUUCCAGAAGGGUGAAUUCUUGAGAACAAUGUUGGAGAUGUGAAUGCCACUGGAAUGCAUGAAUUCCAGAAGGUUGGGCCUGGAACAGUCAGAGAAAAUUGCUACAGACGAAAUAAGAGCACAGUUAGUUCAGUUGCCUGGUGAGAGUAAGCCUGACUGCUUGUUGUCUGCUUGAGCAUAUAAUGCUGGCUUAAACCAGUCACCAACUUAAUAGUAGAAGUGAUGUAAACUGUACCAGAGUGGUACAGAAUCAAAUCAGUUCACUGUUCCAUUUCCUGUUCUUGGCAUGCAUGUACAUCCACUAGAUAUGGAACAGGAGCAAGAUUCAACUUUACCGACAACAGGUCGUCCACCGUGCUACCCACCAAGAAUUCUUUUUUGCAGGAUGUAUGCAUGUCUCUUUGAAUAUUCUCUGACCAGGAGACCAAAGUUAGUUGGUUGAGACUUAAGAAUUGACAAUCAAGACCAUCACAAGAACACAGUAUACCAAAACAACAGGGGAGAAAGUGAGCAGCAGAGAAGCUACCACCAUGCAACAACUAGAAAUACCGGAGCUGAGCUAAGCUGAGCUUCAAUUCUUCACCUGUAAUCACGAUGUCGCGGAGGCCGUCGCCGUGGAUGAAGCUGGUGUACCUCGCCCCCGGCAGCUCCCUCCCCCUUCCGUACGACGGCAGCGGCUCCGCCAGCGGCCAGCUCCUCGUCUCCUGCGUCGAUGUCAACGACACCACUCACCACCAAGAAGAAGAGAGGAAAAGAAAAACAUGGCCAUGGCGGUGGCGAGGUGAGAGUGAGACCUGUGUGGCCUUGAGGACGGCGCCCCUGGCGAGGAAGAGGGUCAUGUGGCUGGUGAGGUUGAAGCUGCCGGUGAGCCACGUUCCGGCCGGCACGAGCAGCGUGGUGCCGCCGCGGCGGCGCUGGUGCUGGAUGCGGUACACUGCCUUGUGGAACGCCCACGUGUUCACCGUCCGGCCGUCGCCCACGCCGCCGAACUCGGCGAUGGACACCGUCUCCGGCCGUGGCCUCGCCGGCACCGCACCGGCGCACGUCGUCGCCUCCGCCGCGUCACAUUGCACCAACAACACCACCAGUAGCACGGUGACCGCGAAGCCAUGCCCAUGCAACGCGGCCAUCAAAGAAAAAAUGAGAGGAAAUUGUUUGCGGCUAAACUAAAGAGAGAGAGGCCAAGCAGAGAGCUCCAAGAAGAGCUUUUUUCUACCGGUGUUUGUGUGAUCCCUAUAGGAGAAAGGUGGCCAAAUCCUGAGCUUAACAAUGCUGAGAGUGAGGGUUGAAGAGAGGAAGGCAAAGCAAAGCUAUAGCUUGCUCCCAAGUGCAAGAAUCCAAGGGUGGUGUGAGGAGAGCCAAGCAGAUGAGUCCAGAGGAUGGGAUGGGGUGGCUCAGCUUUGGAGCAAACCUGUGACUCGCUAGCUCACUUACUCUCUUGUGAGUGUGAGUGUGAGUGAAGAGAAGAAAGAAAAUGGAGAAUGUCUUGUGAAAGAGAGCCAGUUUUGGUCUCCAGUGAAAGCAGUGAAGCUUUUAUUCAGAUCUUGCAUGCUCAUAUAUAAUGGCUGCUCCAUUUCGCAAUUUUCAACUCAGGUGUGUCAGAAUGGUAAAAAUAAAAAUCAAAAUUUCUCCCAUGCUGUUAGUAAGGUAAUCUCCUUCCUUUUAUUUGAAAGCUAGGCAGGUGUUCUACCGAGAUGAAAUGCAAAGGGAAUUUCUUGCUUAAUUAACAUGACAGUCAUGCGGUUGAUCUACCACCAGAUUUGGCGUAGAGGCAGGGGCCCUUCAUUUGCUGCUUUUUUAUCAUCUUCUUUUUUCUUGCGUUUCAUUGCAUCUAAUGCUUUCUCAUCGUGGUACAUAAUUAAAGCCAUUGGGAUCGUGAGCAAAGGUAGAAGAAACAUGCUUUAUCAGCAUGGCAUGGACCAAAUUAAAAGAUCUCUACAUGCACUCCAGCUGGUAUUAUGUUUUGAACGUAUAUACAUGGGCAAAAUAUGGACUUCUGCCAUGUAGAUUGUAGAAUUUAAAUUCAGUCAGGUGUAAGAUGACUGAGUUGUUAUACAUUGUACAUACGUACUAAUACUCCCUCCGUUUUUUAAUAGAUGACGCCGUUGAUUUUUUCUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
21.14%
ME_num:
MEP:
76.63%
HE_num:
HEP:
2.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.69
Avg Expression:
6.16
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.12239029642585 | 0.00806762504054724 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.71831462595031 | 3.71103296998433e-06 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.19879240925799 | 0.00141960653234732 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.62393023410164 | 1.87054958105437e-05 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.89697004040268 | 0.00362038938514131 |