Chr:
Chr2
Start:
6443735
End:
6445283
Strand:
+
Ref_name:
LOC4328719
Sequence
(XR_001543023.2):
UUGAGGAAUGAUGAGCACACCAUGCCCUUGGAUACUGUUGGAGAAAUGAUAUUUGGGUUCAGUGAAGAACCUAAUGGGAAUGAUUUCGCUGGUGUUCUCAGCAUGCACAAGUUUGUCAGCAUUGUCACUUGGUAAACACCUGUUGUCAUGUAUGCAAGGUGCAGUUAGUGCUUAUCGGCUUUUAUCAGCCGUGGAGGAACAAAGCUUGGUGUCUUGGAAUACCAUGAUCUCGGGUUUUCUGGCACACAGGGUUGUUCAUGAUAAACAGAAGGUUUCAAGCCUGAGUGCCGGACAGUUUUACAUGGAACCUGAUGAUUAAUGGGUCUGCAGACUGUGCACACCACGGGAGAUUGUCCAGGUCUUUUCAUCUUUUAGUAAGAUGCAAAUGGAGGGUUUUUCUUUUCCUCGAGAAACUGGCAGGAGAUCUGCCUUGAUUUAUAUUAAGAAGAAUAUCAACUGAGUUAAUUCUCGUCGGCAGAGAUUGGCAACUCCAUCUGUGUGAUGUUCUGAAUUGCCAUGAAGGCGAUUUGCAGUUGUCUUUCUGUUGCUGCUGAAAGAUUCUUCUGUUCCUCUCCAGCCAAAUAUUCUGAAAAAAAACAAUGACAAGUGUGCCGAAUGCUUGUUCAGCCUUAUCAAUUUUUUCGGCAAUGCUGGGAGUUCAAGAAAGUUGUUUCCAGGUUGCAACACUCAAGAGUAGGAAUGUGCAUGAAAGCCUGGUCAUUGCGGGGUGACAUUUGAUUUGAAUUUGCACCAUCCUUAUUCCCUCGCAAGUAAAGAUGGUGCCAUGGUACCAAACAUUACAGUUCCACAAUAUCAAGAACCUGAUAUUAGGUUGAUAUGCUGCGUACCUGUGUUAAACUCUCGUAGUGACCUUGUGCCAUCUCAGCAGAAUUAGUUUUGAGCUUGCAUUUUGCCGCAAAGCCAUGAUCAAGAUUGACCCUGUGGUCGACACGUGUCAAGUGGUGGGAGCAAAGAACCACAUGCACUGUGGAGGCCUAGAGGUUCGCACUGUGAGUGCCGCUUUAGGCAUCACUGAGAAUGCAAGCUGGAGAUGGAGAAGUUAAAAUCAAAUUUGUCAUCUUUUGCGAGCUGAUGGUCCCUUGUAUCAGUGGAGGAUGAGCCCACUGGUUUUGCUGGGAAUGUUCUUUUUGCAGAAUAUUUUAGUCUGCGCCGUAGCGUGUGAUCUGCUGAGUAGAAUAUACUGCUUGUACUACUUUUCUUAGCCACAGUAAUGAUAGAACUGUAAGGAUUUGGUGGAUUUACCUGUAGAAUUUCAUAGUAAUCGACAAAUGAUAUAAUCGGUAAUUAAAUGGCCUUCAAAAUCGAUAGUGU
Sequence
(XR_003240550.1):
UUGAGGAAUGAUGAGCACACCAUGCCCUUGGAUACUGUUGGAGAAAUGAUAUUUGGGUUCAGUGAAGAACCUAAUGGGAAUGAUUUCGCUGGUGUUCUCAGCAUGCACAAGUUUGUCAGCAUUGUCACUUGGUAAACACCUGUUGUCAUGUAUGCAAGGUGCAGUUAGUGCUUAUCGGCUUUUAUCAGCCGUGGAGGAACAAAGCUUGGUGUCUUGGAAUACCAUGAUCUCGGGUUUUCUGGCACACAGGGUUGUUCAUGAUAAACAGAAGGUUUCAAGCCUGAGUGCCGGACAGUUUUACAUGGAACCUGAUGAUUAAUGGGUCUGCAGACUGUGCACACCACGGGAGAUUGUCCAGGUCUUUUCAUCUUUUAGUAAGAUGCAAAUGGAGGGUUUUUCUUUUCCUCGAGAAACUGGCAGGAGAUCUGCCUUGAUUUAUAUUAAGAAGAAUAUCAACUGAGUUAAUUCUCGUCGGCAGAGAUUGGCAACUCCAUCUGUGUGAUGUUCUGAAUUGCCAUGAAGGCGAUUUGCAGUUGUCUUUCUGUUGCUGCUGAAAGAUUCUUCUGUUCCUCUCCAGCCAAAUAUUCUGAAAAAAAACAAUGACAAGUGUGCCGAAUGCUUGUUCAGCCUUAUCAAUUUUUUCGGCAAUGCUGGGAGUUCAAGUAUGAUGUUUUCCAAACAACAGCAAUUGACAUGAAAGUUGUUUCCAGGUUGCAACACUCAAGAGUAGGAAUGUGCAUGAAAGCCUGGUCAUUGCGGGGUGACAUUUGAUUUGAAUUUGCACCAUCCUUAUUCCCUCGCAAGUAAAGAUGGUGCCAUGGUACCAAACAUUACAGUUCCACAAUAUCAAGAACCUGAUAUUAGGUUGAUAUGCUGCGUACCUGUGUUAAACUCUCGUAGUGACCUUGUGCCAUCUCAGCAGAAUUAGUUUUGAGCUUGCAUUUUGCCGCAAAGCCAUGAUCAAGAUUGACCCUGUGGUCGACACGUGUCAAGUGGUGGGAGCAAAGAACCACAUGCACUGUGGAGGCCUAGAGGUUCGCACUGUGAGUGCCGCUUUAGGCAUCACUGAGAAUGCAAGCUGGAGAUGGAGAAGUUAAAAUCAAAUUUGUCAUCUUUUGCGAGCUGAUGGUCCCUUGUAUCAGUGGAGGAUGAGCCCACUGGUUUUGCUGGGAAUGUUCUUUUUGCAGAAUAUUUUAGUCUGCGCCGUAGCGUGUGAUCUGCUGAGUAGAAUAUACUGCUUGUACUACUUUUCUUAGCCACAGUAAUGAUAGAACUGUAAGGAUUUGGUGGAUUUACCUGUAGAAUUUCAUAGUAAUCGACAAAUGAUAUAAUCGGUAAUUAAAUGGCCUUCAAAAUCGAUAGUGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
38.21%
ME_num:
MEP:
61.59%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.67
Avg Expression:
2.24
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.19830047444473 | 0.0111972573749262 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.61023086839707 | 0.0481678448482044 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.79147902478388 | 0.024705732949381 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.46310617483687 | 0.0250700755655585 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 2.3752370388417 | 0.00390642782070405 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 2.18519722813018 | 0.0388448086349531 |
| 7 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 4.1653081134492 | 2.8190840313505e-05 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.0476758129003 | 0.0311250200586627 |