Chr:
Chr2
Start:
6204906
End:
6213791
Strand:
+
Ref_name:
LOC4328703
Sequence
(XR_001543909.2):
CCUUAAAAUAUGUUUGCAGCUGACUUAUAGCCUGCUAUUGUACCUGAAGCUCAGGUCUUGACUUCCUCCUUGAUUUUUGUCACCGUCGUUAUUGUGGAGAGCUUUUUAUGUUGGAACUUGGAAGGCUCUUUGGCUCAUUUUCUUUUACAAAUCCCAAGCAGAUUCUGUUUGGUAUACCUUAGGGAAACUUCAGGCCUAAUCUUUCAGUGGUCAGACGCAGAAUCAAUCCACUUGUUCGUCCUCUCAAAACAAGCAUAAUAUUAGUAUACAUUAUAAUCAGAACCUGUGGCUGAUUGAGCAGGAUUUGACACUACAGUUCGAACUGUAUACUACUCUAUUGACUGAUGGACUGCCCACUCCUAGCUGGCUAGCAAGUAGCAAGUAGAGAAGCUGCAUUGUCAUAGCAAAACCGCGUCGUUGCGUUUAUCUUGUAUAUAUAUGGGGGGCAAAGCCUUGGACGUGAGAACUACAGCCGAGUGAUCUACCAGCUUCAGAUUUCAGAGAGCGAUUGAUCAAGUGUAGUAGAGCGAGCUCCAUCUGCGGCCAUGGGAGCAGCUCGUCGGCUUCGCUUCGGGCUACGAGCGCCAGCGGCGUCGGCCAUGUCGGUCCUACUACUGCUGCUGCCGUCGUCGCUUUCGCUCGCGCUCUCGCCGCCGCCGCCGCCGCCCUUCUUCCCUCCGCAGUGGGCGCCGCCGGUGGCCGGCGGCGGUGGCCCUUUCGCUGGUCGACGUGGAAUGUAUCGUUGGCCAGGCCCCAGGACAUAGCAAGCCAAUCUAAGGGUUUAUUUGGGGGAGCUUUAAAUUUUGAGAAGCAGCUGUUUGGUAGCCAGCUUCUGAGAAUCUGGAAAAGCUCUGAAACCUAGCUUUUAUAUCUUCUGGCUUUUUAGUUCAUUUUUCAGAAUCUUAGACUGUUUGGGGCAGCUUCUAGCAGAAGCAGCUUUUAGGAAAAGCUGCAGCUGGGACAAACUCUCCCAAACAGGGCCUAAGUAGCACAUAGAUCACAUCUAUUUUAAAUUCUUCUGAAACUUGUUGAUGUGUGUCCAUUGCCAAAGACUGGAGAUAUAAUCUAUUUUCAUUAUUAAAAAAAUAGCACAUAGCUAGAAAUUCAUGCCCAAAAGUUUGUAUUCGAGUCUAUGUAAAUUUGCUCCAAACGUAUCUGAAACUGUUGAAUAAAGAUGAACUAUCUGCUCAUACGAAUAAAAUUAUUUGAAACUAGGAAAGACCGAUAUGUGGUGGUUCAUCUGGUUCAAAUCAUGCUGCUCAUAAAUAUCACACCACGAAAAUGCUUUCAAUAAAAUUGUAACUAUAUUAAGAGUGUUUCUUAUAGGAUGUGUUAAAGCGCACAUUCAUGCGUAUAUGCGCAUGUGUAUGUCUUCCCUUAAAUGAAAAAAAUAUGUAAUUUUUAAAAAAUAAAAUGAAAAAAAAGUUUGGAAUUUACAUGAGAUUUUUUUGAGAGGAAAAAAAACUUGCUACUAGAAAGUUAAUUAAGAGAGAGAAUGGAAUACAUCUAUGAGGACGGCCUGCCCACAGCCCAACAUCAACAAGGCCCGACCCAACCUUGUUUUGUCACCCUCCCUUUCUCUCUUUCUCCAACUCUUCGACGGCGUCGACCCUGUCGCGCCGCCGCGGAGCGGCGGAGGAAGACGAGACGAUGGGCGGCGCAGGCGCGGCGGAAGGCGGCAGGUUUGCCAGGCCGGCGCCGUCUUCUCCAAGAUGUGCAAGCCAGACUUCUUAAUUCAUUUGAACAUGCCUCAUUAUCCCAACCAGGAGAUGGAAUCGUAGGAUCUUGGUGCCUGUGGUAGCAAGAGAGGAAGUCCAUCCAUUGGAUGAGAUUUUUGAGACAUCGCCUGUACAUCAACCAAGGAUGGAACUGAUCAACUGUAGAUCCAGCUAAAAAUUGCAUUUUUUUUAACGCAAAGAAAAGAUUGACAAGGUAAUAUUACGUCAAUAAUCACAUUAUCUGUUUUACCCAGAUGGACAGUUGUUGAUGAAUUUAUAUAGGUAGGAAGAUGACAACGUACUUGACUUGCGUGAAUUUUGCAUGGUCACCACCAUGUAUUUUUUUGCUGACAAUGAUGUUCCACUUGCUAGUUACCUUGUGUAAUUAUUGCUGACGUUACUUUUGCAUGGUCACCACCAUGUAUUUUUUAGCUGACAAUGAUGUUCCACUUGUUAGUUAACUUGUGUAAAUUCAAAACUAAUUACGUCAGGUUGGAAUAUUACACAGUAUACUAACGGUUUCAGCCAAAAGAAUGAGACAGAAACAGAGGGUGCCGACUUGA
Sequence
(XR_001543910.2):
AAAAUAUGUUUGCAGCUGACUUAUAGCCUGCUAUUGUACCUGAAGCUCAGGUCUUGACUUCCUCCUUGAUUUUUGUCACCGUCGUUAUUGUGGAGAGCUUUUUAUGUUGGAACUUGGAAGGCUCUUUGGCUCAUUUUCUUUUACAAAUCCCAAGCAGAUUCUGUUUGGUAUACCUUAGGGAAACUUCAGGCCUAAUCUUUCAGUGGUCAGACGCAGAAUCAAUCCACUUGUUCGUCCUCUCAAAACAAGCAUAAUAUUAGUAUACAUUAUAAUCAGAACCUGUGGCUGAUUGAGCAGGAUUUGACACUACAGUUCGAACUGUAUACUACUCUAUUGACUGAUGGACUGCCCACUCCUAGCUGGCUAGCAAGUAGCAAGUAGAGAAGCUGCAUUGUCAUAGCAAAACCGCGUCGUUGCGUUUAUCUUGUAUAUAUAUGGGGGGCAAAGCCUUGGACGUGAGAACUACAGCCGAGUGAUCUACCAGCUUCAGAUUUCAGAGAGCGAUUGAUCAAGUGUAGUAGAGCGAGCUCCAUCUGCGGCCAUGGGAGCAGCUCGUCGGCUUCGCUUCGGGCUACGAGCGCCAGCGGCGUCGGCCAUGUCGGUCCUACUACUGCUGCUGCCGUCGUCGCUUUCGCUCGCGCUCUCGCCGCCGCCGCCGCCGCCCUUCUUCCCUCCGCAGUGGGCGCCGCCGGUGGCCGGCGGCGGUGGCCCUUUCGCUGGUCGACGUGGAAUGUAUCGUUGGCCAGGCCCCAGGACAUAGCAAGCCAAUCUAAGGGUUUAUUUGGGGGAGCUUUAAAUUUUGAGAAGCAGCUGUUUGGUAGCCAGCUUCUGAGAAUCUGGAAAAGCUCUGAAACCUAGCUUUUAUAUCUUCUGGCUUUUUAGUUCAUUUUUCAGAAUCUUAGACUGUUUGGGGCAGCUUCUAGCAGAAGCAGCUUUUAGGAAAAGCUGCAGCUGGGACAAACUCUCCCAAACAGGGCCUAAGUAGCACAUAGAUCACAUCUAUUUUAAAUUCUUCUGAAACUUGUUGAUGUGUGUCCAUUGCCAAAGACUGGAGAUAUAAUCUAUUUUCAUUAUUAAAAAAAUAGCACAUAGCUAGAAAUUCAUGCCCAAAAGUUUGUAUUCGAGUCUAUGUAAAUUUGCUCCAAACGUAUCUGAAACUGUUGAAUAAAGAUGAACUAUCUGCUCAUACGAAUAAAAUUAUUUGAAACUAGGAAAGACCGAUAUGUGGUGGUUCAUCUGGUUCAAAUCAUGCUGCUCAUAAAUAUCACACCACGAAAAUGCUUUCAAUAAAAUUGUAACUAUAUUAAGAGUGUUUCUUAUAGGAUGUGUUAAAGCGCACAUUCAUGCGUAUAUGCGCAUGUGUAUGUCUUCCCUUAAAUGAAAAAAAUAUGUAAUUUUUAAAAAAUAAAAUGAAAAAAAAGUUUGGAAUUUACAUGAGAUUUUUUUGAGAGGAAAAAAAACUUGCUACUAGAAAGUUAAUUAAGAGAGAGAAUGGAAUACAUCUAUGAGGACGGCCUGCCCACAGCCCAACAUCAACAAGGCCCGACCCAACCUUGUUUUGUCACCCUCCCUUUCUCUCUUUCUCCAACUCUUCGACGGCGUCGACCCUGUCGCGCCGCCGCGGAGCGGCGGAGGAAGACGAGACGAUGGGCGGCGCAGGCGCGGCGGAAGGCGGCAGGUUUGCCAGGCCGGCGCCGUCUUCUCCAAGGAUCUUGGUGCCUGUGGUAGCAAGAGAGGAAGUCCAUCCAUUGGAUGAGAUUUUUGAGACAUCGCCUGUACAUCAACCAAGGAUGGAACUGAUCAACUGUAGAUCCAGCUAAAAAUUGCAUUUUUUUUAACGCAAAGAAAAGAUUGACAAGGUAAUAUUACGUCAAUAAUCACAUUAUCUGUUUUACCCAGAUGGACAGUUGUUGAUGAAUUUAUAUAGGUAGGAAGAUGACAACGUACUUGACUUGCGUGAAUUUUGCAUGGUCACCACCAUGUAUUUUUUUGCUGACAAUGAUGUUCCACUUGCUAGUUACCUUGUGUAAUUAUUGCUGACGUUACUUUUGCAUGGUCACCACCAUGUAUUUUUUAGCUGACAAUGAUGUUCCACUUGUUAGUUAACUUGUGUAAAUUCAAAACUAAUUACGUCAGGUUGGAAUAUUACACAGUAUACUAACGGUUUCAGCCAAAAGAAUGAGACAGAAACAGAGGGUGCCGACUUGA
Sequence
(XR_001543911.2):
UUAUCUCCUUAAAAUAUGUUUGCAGCUGACUUAUAGCCUGCUAUUGUACCUGAAGCUCAGGUCUUGACUUCCUCCUUGAUUUUUGUCACCGUCGUUAUUGUGGAGAGCUUUUUAUGUUGGAACUUGGAAGGCUCUUUGGCUCAUUUUCUUUUACAAAUCCCAAGCAGAUUCUGUUUGGUAUACCUUAGGGAAACUUCAGGCCUAAUCUUUCAGUGGUCAGACGCAGAAUCAAUCCACUUGUUCGUCCUCUCAAAACAAGCAUAAUAUUAGUAUACAUUAUAAUCAGAACCUGUGGCUGAUUGAGCAGGAUUUGACACUACAGUUCGAACUGUAUACUACUCUAUUGACUGAUGGACUGCCCACUCCUAGCUGGCUAGCAAGUAGCAAGUAGAGAAGCUGCAUUGUCAUAGCAAAACCGCGUCGUUGCGUUUAUCUUGUAUAUAUAUGGGGGGCAAAGCCUUGGACGUGAGAACUACAGCCGAGUGAUCUACCAGCUUCAGAUUUCAGAGAGCGAUUGAUCAAGUGUAGUAGAGCGAGCUCCAUCUGCGGCCAUGGGAGCAGCUCGUCGGCUUCGCUUCGGGCUACGAGCGCCAGCGGCGUCGGCCAUGUCGGUCCUACUACUGCUGCUGCCGUCGUCGCUUUCGCUCGCGCUCUCGCCGCCGCCGCCGCCGCCCUUCUUCCCUCCGCAGUGGGCGCCGCCGGUGGCCGGCGGCGGUGGCCCUUUCGCUGGUCGACGUGGAAUGUAUCGUUGGCCAGGCCCCAGGACAUAGCAAGCCAAUCUAAGGGUUUAUUUGGGGGAGCUUUAAAUUUUGAGAAGCAGCUGUUUGGUAGCCAGCUUCUGAGAAUCUGGAAAAGCUCUGAAACCUAGCUUUUAUAUCUUCUGGCUUUUUAGUUCAUUUUUCAGAAUCUUAGACUGUUUGGGGCAGCUUCUAGCAGAAGCAGCUUUUAGGAAAAGCUGCAGCUGGGACAAACUCUCCCAAACAGGGCCUAAGUAGCACAUAGAUCACAUCUAUUUUAAAUUCUUCUGAAACUUGUUGAUGUGUGUCCAUUGCCAAAGACUGGAGAUAUAAUCUAUUUUCAUUAUUAAAAAAAUAGCACAUAGCUAGAAAUUCAUGCCCAAAAGUUUGUAUUCGAGUCUAUGUAAAUUUGCUCCAAACGUAUCUGAAACUGUUGAAUAAAGAUGAACUAUCUGCUCAUACGAAUAAAAUUAUUUGAAACUAGGAAAGACCGAUAUGUGGUGGUUCAUCUGGUUCAAAUCAUGCUGCUCAUAAAUAUCACACCACGAAAAUGCUUUCAAUAAAAUUGUAACUAUAUUAAGAGUGUUUCUUAUAGGAUGUGUUAAAGCGCACAUUCAUGCGUAUAUGCGCAUGUGUAUGUCUUCCCUUAAAUGAAAAAAAUAUGUAAUUUUUAAAAAAUAAAAUGAAAAAAAAGUUUGGAAUUUACAUGAGAUUUUUUUGAGAGGAAAAAAAACUUGCUACUAGAAAGUUAAUUAAGAGAGAGAAUGGAAUACAUCUAUGAGGACGGCCUGCCCACAGCCCAACAUCAACAAGGCCCGACCCAACCUUGUUUUGUCACCCUCCCUUUCUCUCUUUCUCCAACUCUUCGACGGCGUCGACCCUGUCGCGCCGCCGCGGAGCGGCGGAGGAAGACGAGACGAUGGGCGGCGCAGGCGCGGCGGAAGGCGGCAGGUUUGCCAGGCCGGCGCCGUCUUCUCCAAGCAGAUGUGCAAGCCAGACUUCUUAAUUCAUUUGAACAUGCCUCAUUAUCCCAACCAGGAGAUGGAAUCGUAGGAUCUUGGUGCCUGUGGUAGCAAGAGAGGAAGUCCAUCCAUUGGAUGAGAUUUUUGAGACAUCGCCUGUACAUCAACCAAGGAUGGAACUGAUCAACUGUAGAUCCAGCUAAAAAUUGCAUUUUUUUUAACGCAAAGAAAAGAUUGACAAGGUAAUAUUACGUCAAUAAUCACAUUAUCUGUUUUACCCAGAUGGACAGUUGUUGAUGAAUUUAUAUAGGUAGGAAGAUGACAACGUACUUGACUUGCGUGAAUUUUGCAUGGUCACCACCAUGUAUUUUUUUGCUGACAAUGAUGUUCCACUUGCUAGUUACCUUGUGUAAUUAUUGCUGACGUUACUUUUGCAUGGUCACCACCAUGUAUUUUUUAGCUGACAAUGAUGUUCCACUUGUUAGUUAACUUGUGUAAAUUCAAAACUAAUUACGUCAGGUUGGAAUAUUACACAGUAUACUAACGGUUUCAGCCAAAAGAAUGAGACAGAAACAGAGGGUGCCGACUUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
28.66%
ME_num:
MEP:
64.63%
HE_num:
HEP:
6.5%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.90
Avg Expression:
22.50
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 5.37616734167276 | 2.94382724043786e-200 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 4.6053216459055 | 2.13270235005031e-144 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 5.42971440369245 | 1.91749294865904e-214 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.85887099444622 | 3.49900798998047e-18 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 5.40935380650444 | 1.21386300190836e-203 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.14346698122124 | 0.000424617464284757 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.1847752342926 | 5.51116165980437e-23 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.26294973389425 | 0.0184601067116716 |
| 9 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.52774046915067 | 4.59526652072575e-05 |
| 10 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 1.77501526367049 | 4.37830578974692e-05 |
| 11 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | 6.62127520214242 | 0.0159152444981421 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.16475573778026 | 9.53167640293966e-06 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.32467089246821 | 2.4575307517563e-188 |
| 14 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 1.49580840647946 | 0.0248417713033195 |
| 15 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.48934145942797 | 2.76036407454318e-05 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.21446737242062 | 6.73247774656077e-20 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.26188641151646 | 1.64142389047938e-06 |