Chr:
Chr2
Start:
4987178
End:
4997940
Strand:
+
Ref_name:
LOC4328569
Sequence
(XR_001543146.2):
CCCGUUAUACGUAAACGGAACGCGGAGGCGUAUGCUGGGCCAUCCUGCUCAAUUCGACCUCGCCGCCGGCCACCCACUCACCCACCCCGCCGUGAGCGAACCCUACCCAGACCUCGCCGGGAACCAGUCCAAGCGGAGGACGCCGCCGAUCACUCCGACGACGAGGACGCCCGCCCGGUAGCGUCUCUCUGGAGGAGAUCAAGUACGUGAGGAAGGAGACAAAGAUGCUGAGGAGGAGGAUCUCGUUAUCCAGGACAGGAGGCCGCCGUCACCAUCGAGGAUUCCAACAUCCGCGUUUAACUUCGUGUUGAGAUAUGUGGAGAAUGAGCUGUUGAAGAAGAGGGGCCAAGAAGAUUGAUGUGAUAGACAAGGAGGAGAAAUGACCAGGUCGAUGAGCUCAAGGUUUUUAGCCGAGUAGAGCUUCGAUGUACUCCUGUUAGGAAGAACUCGGAAGAGAGCUCAACGCAGUGGAUCACCGGCAUUGCUGAAGUUCAUCUGCCUAUUGUUUCUGACGACUGAUUUAAACUGGGGUGUGAAUUUGGAAAUGCAAGCUGUGUUGUGAUGCAAAACCUCAGUGCUGGACCUGCUGAUUGCCUCCUUGUUGCAAAUUAACCAAGCUAAAAUAUGUUCCAGAGAGGCCCUUGGCCAUGAGGGAUGCGUGUGUGCCCUUCUCCACAACUGUCCCUUUUUCGAGCACAGUGAUAAGGUCGCAGUUUUGUAUAGUGCUGAGCCUGUGUGCGACCACCACACUUGUUCUGCCAAUCAUCACCCGAUCCAGUGCCUCUUGUACCACUUUCUCAGACUGGCUGUCUAGCGCACUUGUAGCCUCAUCCAGAAGUAGGAUAGCUGGGUUCUUCAGGAUGGCACGGGCAAUUGCAAUGCGUUGUUUCUGCCCUCCUGAUAACUGAACUCCUCUCUCACCACACCACGUGUCAUAUCCAUCCUUCAGGUUGCUGAUGAAGUCAUGUGCAUUAGCAGAUCUUGCUGCAUCCUCAAUUUCCGCCUCACUAGCCGUUUCUGUGCCAUACACAAUGUUUUCUCUGAUUGUACCUGCAAAUAGUGUUGGCUCUUGGCUGACCAGUCCAAUGUGCCGCCGCAGGGCUCGAAGAUUAUAUGCUUUGAUAUCCCUUCCAUCUAUCUUCACCGACCCCCUAAUUGGGUCGUAGAACCUCUCUAUGAGCCCAAUGAUGGUUGACUUGCCAGAGCCACUUUGCCCAACCAGGGCUGUUGACUUGCCUGGUUGGAUGCUCAAUGUGAACCCUUUGAAGAUUAUAACAUCUGGCCUUGAUGGGUAUGCAAAAUCGACUCCUCUGAUGUCCACCUCGCCUUUGAGCUUCUCUGGCUUGUAUCCCUGAGGGUUGUCAGGAUCAAUUUCUGUUUCCCGGUCAAGAACAGCAAAUACUGAAGCAACUGCAUCUGCACCCUUAGCUAGGUCUGUUGUCAUGCUUCCUGCAUCUGCAAUCACACGACCUGUGCUUACUAGAAUCAUGAAGGUUUGGAAGAGCUCCUUAGCACUAAUGUGGUGCUCAGCCAUAAGCCUGCCACCAUACCAAAAGUCAAGGGCCCAUGUGCAUGUCAUAAGGCUCAUGGAGGUGCCGAGUCCGAGCCCUGCAAACCAUGAUUGCCGGAUGCUUUCCUUGCGUGGUCCAUCUUGUGAUUGUUCAAAAAGGCGUAAGAUGCGCUCUUGGGAUGAGAAGGCUGUAAUUGUACGAAGAUUGGAGACUGCCUCAGCAGCUAGCUUGCUACUUUCAGCUUGUGCAUGUAUUGAUUUCUUGGACAUGCUCUUGAGUAAGACACGGCGAGCAUAAAAGCAAACAAUGAUCAGAGGCUGCACUGCUAUCAUAACAAGGGCCAAACGCCAGGCAAUGACCAGACCCAUGGUGCAUGCAAUAAGCACUGCUGAAAUAGUCUGGAUCACCAGAGCCAUUCGAUCACCCACGAGAGACCUCACCUACAACAACAACAAAAGUAUGGCAGCUAGCUGUGAGCAUAUGGCACCACUGGAGUUCUCGUCACGGUCAAACCACCCAAUUUCGAAGAUUUAUCUUCUAGGAAACAAGUUAUGUUUCCUGGCGAAUAAAAAAGAAGUCAAGAGGCAAAACUUCUAUACAAAUAGAAAGAUGCAAGGUCUGCUGGAGAGGAACUAUGCUGAAGCAGCGGCAAGGAAAGCUGCACCUCAAGGACUGCCAUAGUCUUCAGCGCCUGAUUGGGGCCCUGAGGCAGCUGGGAGAUGAAGUUGUGUGCGUUGGCCGCCUUGGCGGCGGCGACCACCUCCUCCGCCGUGGCCUCCUCCUUUCCGAACAGGAUGUUCUCCCUGAUGCUGGUGGCGAACAGCGCCGGCUCCUGGCUCACCAGCCCCAUCUGCGCUCGCAGCCACUUUAGCCGGAGCCUCCGGAUGUCCACGCCGUCGACCAUCACCUCGCCGGCCGACGGGUCGUAGAACCGCUCCAGCAGCGCGAUCACCGUCGACUUGCCGGACCCGCUACCGCCGACCAGCGCCACGGUGCGCCCCGCCGGCACGCGGAGGUUGAAGCUGACGAAGAUGGGGCUCUCUGGCCGCGACGGGUAGCAGAACUCCACGUUCCGGAACUCCACCUCGCCGGUGACGUUGGCCAGCUCCUCACCGGUGUCGCUCUCGGAGUCGAUCUUCGGCACCCGCCGGAUCACCUCCAGGAUCCUCUCCGCCGCCGAGCUCGCCUCCGAGAAGUACUUCACGUUGGACAGCCCCGACCCCAGCGCUCUGCAAUCCCAUGCAAAAGGCCACCGACGACAAUGGCGGCGGAGACGGCGAAGACGGUGCCGCCCUGGUAUCCAUGGUACAUGACGAGGCGGCUGCCGUACCAGACGUUGAAGGCCCAGAUGGCGAAGGUGAUGCCGUUGCUGCCGACGGCGAUGCCCUUGGCGAGCCCCUGCUUGAGCCCGAGCCGCGCCGACUCCUCGAGCGCUGCCGAGAACUGAGCCAUGGUGGUCCGCUCCGCCACGAACGAGUACACCGUGCGCGCCGACGACACGGCCUGCUCGGCGAUGGCGCCGGGGCGGGUGUACUGCUCCCUGAUCCGGCGGGCGAGGCCGACGAGGAUGCGGCCGUACAUGAACCCCGGGAUGAUGAGCAGCACCACCGACGGCAGCGCCACCAGCGUCAGCCGCCACAGCAGCGCGAACCCGACGGCGUAGCUGCCGGCGAACAUGGCGGCGUUCAUGACGAAGUUGGGCACCUUCUCGCUCAGCACGUCCUGCACCACGAGGCUGUCGUUGGACACGCUGGUGAUCACCUCCGCCGUCGACCCCUUCUUCAGGUCGAAGUACUCCACGUCUUGCCGGAGCACCGCCCGAAGGUACCGUGCCCGCAUCCGCGAUGCCUGCCGCUCCGCCGUCCUCGCCCAGCAAUACCCCUCUGCUCACACACACGACACCCCUCGCCGGCGGCGUCAGCUCGCCGUCGCCGCAGCAUUGGCAUGCAACAGUUCAGGAUCGAGCUGGGCGGCGAGGAGCUACAAGGUACGUACCACGUUGACCUUGGAGCUGAACUCCUUGACGAUGUCGGCGCCACUGCCGAGGUCGUUGAAGAUGCGGCUGGUGAUGAGCAGCAUCACCGGCGUCGAGAUGCCGUCGCCCAUGGCGCCCAGAAGCCCAAGCACCAUCAGCGCCACGUCCGCCGCGUCCGCGUGCAUGAACACUGUCAUGAACGACGAGAACACCGGCCUCGCCUUCGCCUUGCCGGCGCCGCCGUCGCCGCCUCCCAUGGCCGUCGUCGGCGAGUUCUCAGCUAUAGCUUGGUAGCUAUCUAGCUCAAUUUGCUGUCUCCAAGUGUGACAGCUAGUUGUAAUUGAGUUGGUAUAGCUUUGGCCUCUUCUUUUAUUUUUUUCAGGCCGUUUAGAUGGUAACCUCUCUGACUUGAGAGAGUUAGAGAGGCCUUGUAUAUACGGAGUAUAUAGUACUCCAGUUUAGUUGCCAUGCCAGCAGUUGCAUGCACUAGUAAGCAACUAGUCUCUCGGUUUCAUAUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
37.8%
HE_num:
HEP:
61.99%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.55
Avg Expression:
11.22
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | 9311 // leaf // control--/--9311 // leaf // salt | -1.01064381310807 | 0.00378969767032446 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.17534872682617 | 2.58203460203641e-06 |