Chr:
Chr1
Start:
8465568
End:
8469431
Strand:
-
Ref_name:
LOC4327712
Sequence
(XR_001542696.2):
UCCACCUCUCCACCGCGCCAUCCUCUCCGCCCCCUUUCUCUCGCUCUCACGCGUCCCCGCCCCUCCCCAACCGCGCGCCGCUCCCCAACCCUAAUCUCUCCCUCUCACGCGGCACCACCGCCGUCGUUGCCGCCCUCGACUGCCGCAGCUCCGCCGUCGUCGCAUCCGUCGUCUCGCCGCCACCGAUCCCCGCGCCACCACCGUCGCCGCCGCCCUCGACUGCCGCCACUCCGCCGUCACCCAUCGUCGCAUCCGUCGUCGCCGCCGCCCUCGACUGCCGCCGCUCCGCCGUCGUCGCAUCCGUCGUCGCCGCCACCCUCGACUGCCGCCGCUCCGCCUUCGUCGCAUCCGUCGUCUCGCCGCCACCGAUCCCCGCCGCCGGCUCGCCCUCAACCAAUCCCCAUCACCGUCGUCGCAUCCGUCGUCGUCCAGGAUUUACGUCACCGUUCCGUCACCGCACCCACACGAUGAUCCCCGGCGACGGAACGGGUCAUGGUGGCCUUGGAGGAUACUCGGGCCCGACGAGCUCUCGGCGUCUCAGGUAAUGUCGCCGAAGACAAGAACUCCGGUCAAGCUCCUCGGCCGUGAGGACGCAAGCGUCGCUCCUCCCUCUUGCUCCGAUCUGGCCUUAGUGAUGCCGCCCUGUUUUCGCGGUUGAUCCCGGCACCAGCCCCUUCCUCUGGCCGCGUGCGAGUUCGAGAUUCCAAGUCCCGGUGGUCGGAUUUCUCAACCCCGGCACUGGCCUCGCACAGGCUGCGAUCCGCUCGCCAACAAGGCUUGUGUAGAGAAGAAAAGGUGGAAUUGUGGAAGGUAAUCGCGGGGAGUUUUGGUUCAUUUUUUGAAGAUUUCUCUAAUUGGUACGUACUAAUUAACCAAUUGGAGUUUUGGUCUCGUUACUCACUGUAAAAACAUGAUGGUAAAAAAACAGUUUAAUCCUAUUGGUACUCUUUUAUCCCAUUGAACAUUUUGUCGUUGUGUCAUUGACUACUAUCAAAAAGGAAAAACAGUGGAUGACUCUUUCAGGAAAUAUAGGAUAGCCCCAUUGAUGGCACAUUUUGAACCGUUCAUGAUCCCUGAUUUAUUCUCUUGACCAUAUUCUGCACUGCUAUGCUUGCUAAGUAAUACAAAUAUAUUUAUAUCCCUGUAGCAUGUCAGUUACUCUAUAAGACAAUUUUUUUUACAUAACUAAUUAACAUUUUUACUAAACUCUUUUAUUUUGACAAUCACUCUAAGACGUAUGCAAUUGCGUCUUACGAAAGCAAGUGACCCUGAGAGCACUGAUCUUUGUAAAGAUGCACACAGCUUACUGCAGGAGAGGAUAACAAAAUAGAAGUCUAUAAAAAUCUAUAGAAGGGAUCAAAUAUGCUUGACUGAAUGAUAGAGAUGGAAAAAUGAAGAAGUGAUGACUGUUGUUUCACAAUGUAUUCAUUUCAUCUAUCCUAUAAUUGUAGUGGUGUGUCAAUGUGUGAUACUUCUAGAUUUUCCCAGCUCCAUUUUGCCAGCUCCGUGUGUGUUAAUGAUUCAGAAGUCGUGGAAUUGCUUGGAACAUGUAAUUUAUUCUCAACCAUUUUUUGUGGAAGUGUGGAUGUGCAUUGUCUAAUAUAUUGGUAUUGAAGUGAUUAAAUAUGAUUAUUGAUGGUUUUGAAUUAA
Sequence
(XR_003241526.1):
CUCCACCUCUCCACCGCGCCAUCCUCUCCGCCCCCUUUCUCUCGCUCUCACGCGUCCCCGCCCCUCCCCAACCGCGCGCCGCUCCCCAACCCUAAUCUCUCCCUCUCACGCGGCACCACCGCCGUCGUUGCCGCCCUCGACUGCCGCAGCUCCGCCGUCGUCGCAUCCGUCGUCUCGCCGCCACCGAUCCCCGCGCCACCACCGUCGCCGCCGCCCUCGACUGCCGCCACUCCGCCGUCACCCAUCGUCGCAUCCGUCGUCGCCGCCGCCCUCGACUGCCGCCGCUCCGCCGUCGUCGCAUCCGUCGUCGCCGCCACCCUCGACUGCCGCCGCUCCGCCUUCGUCGCAUCCGUCGUCUCGCCGCCACCGAUCCCCGCCGCCGGCUCGCCCUCAACCAAUCCCCAUCACCGUCGUCGCAUCCGUCGUCGUCCAGGAUUUACGUCACCGUUCCGUCACCGCACCCACACGAUGAUCCCCGGCGACGGAACGGGUCAUGGUGGCCUUGGAGGAUACUCGGGCCCGACGAGCUCUCGGCGUCUCAGGUAAUGUCGCCGAAGACAAGAACUCCGGUCAAGCUCCUCGGCCGUGAGGACGCAAGCGUCGCUCCUCCCUCUUGCUCCGAUCUGGCCUUAGUGAUGCCGCCCUGUUUUCGCGGUUGAUCCCGGCACCAGCCCCUUCCUCUGGCCGCGUGCGAGUUCGAGAUUCCAAGUCCCGGUGGUCGGAUUUCUCAACCCCGGCACUGGCCUCGCACAGGCUGCGAUCCGCUCGCCAACAAGGUAAGUCAUUAUUGGGAUGUUUAUAUCUGAAAAUUUAGAUAAUUUCUUUUGAACUUCAUUGCUUGGUCAACAACAUAACCCAGGAAACCAAUUAAAUUGAUAGACAUGUUGUGUGCUCUCUUAAGAGAUCAACAUCCAAAUUGACAUCCAAGUUAAAAGAAGAAUUUAAUUAUCUAAAUCAUGAUGCCAAUAUUGAGAGCUUCUUUUACUUUCCGUUGUAUACAUUUUCUGUGAUGUGUACCGAAGGUUAUAUACAUAAUGAGAUUUUACUUCAAUGGUGGAAUUGUGCUCUAUUGAACCACAUGGAAAGUUCUGAUUUGUGCAGUGAUAAUUUUUCCCUUUAAAAAGUCAAAUUUGGUUUACAUUUUUAUUCAUGACACCUGAAUAUGUAGAAUGCCAUGCAUUAGUAAUGUGCAAGCACUUUCAAUGUAUUGUCUAAACUCUAAAGGAACAACUUACCAGUUUAUUAGUGAAUUUAUGAAAAAAAAAUCAGAUGUUUAAUGUCUGAAUAAAUUCAGAUUCUCUUCUCUGCUUCAUGCCUUCAUCAGGAUGAGGUAGUUAGUGUUGUACUGUAGUUGACGAAUCGAUUUGUUCGCAUCGUGAUAAGGCGCAGAAGGUAAGGCGGAAAUUGCCUUGGUUUAUCCUCUCCCCCUAAAUUUCCUCUGCUGCGAUUGGUUGAUUGGUUAAUGAAAAACCCAAUACUUGCAAGCAGAUUCUGAUUAGAUUCUUAAUUAUUGGGAUUUUCUAGAGUUAGUUUAAGGAAAAGUGAGUUAAUUAUCGACGAUGAAAUAUACACUUCCAUGAUUAGAAUUAUAUAUCGUAUAGACAAAUAUGUGUAUGUAUUAAAAAUAUCUGACAAAUUGGACUGUAUGAUUAUAAUGCCUUUCAACCAUUGCUUUGUGCAAUGCUCAUUAUAUCUCCCGGAAAUUAAUCGAUUUCUGCUUUUGUACCAUGUGCAAUGUUUACUUUUAAACUGCUCAGGUUCAUUCUAUCUUAUUUUCUGGUGCUUCUGAAGCGAUGUAUAUUUCUUCAUUUUUAAACUGCUCAGGUUCAUGAAUGCCACCAUCACUGAAUGCACAUCUGGUCCUCCCUUAUUUUCGUUCGUAUGUAGUAUGUACGUAAGAACUAACAAGUUUAUUCAUUCAAAGAAAAACUAACAAGUUUAUGUUAAGCUUCCUUUUUAAUAAUAUUUUACAUUACUGAUAUUUAGUGCAGUGAAAAAUGCUGCAAAUCUCUGAUAUUUAGUGCAGUGCAAAAAUGAUACAUAGCUUGAUUGGAUGCUCUUUCUCAUUAUGGCCAACUGCUUGAUGGAAUUUUUUCCAUGUGAAAACAAAUGUUUACUCUGUUUCAGGCUUGUGUAGAGAAGAAAAGGUGGAAUUGUGGAAGGUAAUCGCGGGGAGUUUUGGUUCAUUUUUUGAAGAUUUCUCUAAUUGGUACGUACUAAUUAACCAAUUGGAGUUUUGGUCUCGUUACUCACUGUAAAAACAUGAUGGUAAAAAAACAGUUUAAUCCUAUUGGUACUCUUUUAUCCCAUUGAACAUUUUGUCGUUGUGUCAUUGACUACUAUCAAAAAGGAAAAACAGUGGAUGACUCUUUCAGGAAAUAUAGGAUAGCCCCAUUGAUGGCACAUUUUGAACCGUUCAUGAUCCCUGAUUUAUUCUCUUGACCAUAUUCUGCACUGCUAUGCUUGCUAAGUAAUACAAAUAUAUUUAUAUCCCUGUAGCAUGUCAGUUACUCUAUAAGACAAUUUUUUUUACAUAACUAAUUAACAUUUUUACUAAACUCUUUUAUUUUGACAAUCACUCUAAGACGUAUGCAAUUGCGUCUUACGAAAGCAAGUGACCCUGAGAGCACUGAUCUUUGUAAAGAUGCACACAGCUUACUGCAGGAGAGGAUAACAAAAUAGAAGUCUAUAAAAAUCUAUAGAAGGGAUCAAAUAUGCUUGACUGAAUGAUAGAGAUGGAAAAAUGAAGAAGUGAUGACUGUUGUUUCACAAUGUAUUCAUUUCAUCUAUCCUAUAAUUGUAGUGGUGUGUCAAUGUGUGAUACUUCUAGAUUUUCCCAGCUCCAUUUUGCCAGCUCCGUGUGUGUUAAUGAUUCAGAAGUCGUGGAAUUGCUUGGAACAUGUAAUUUAUUCUCAACCAUUUUUUGUGGAAGUGUGGAUGUGCAUUGUCUAAUAUAUUGGUAUUGAAGUGAUUAAAUAUGAUUAUUGAUGGUUUUGAAUUAA
Sequence
(XR_003241528.1):
CGUCUCCACCUCUCCACCGCGCCAUCCUCUCCGCCCCCUUUCUCUCGCUCUCACGCGUCCCCGCCCCUCCCCAACCGCGCGCCGCUCCCCAACCCUAAUCUCUCCCUCUCACGCGGCACCACCGCCGUCGUUGCCGCCCUCGACUGCCGCAGCUCCGCCGUCGUCGCAUCCGUCGUCUCGCCGCCACCGAUCCCCGCGCCACCACCGUCGCCGCCGCCCUCGACUGCCGCCACUCCGCCGUCACCCAUCGUCGCAUCCGUCGUCGCCGCCGCCCUCGACUGCCGCCGCUCCGCCGUCGUCGCAUCCGUCGUCGCCGCCACCCUCGACUGCCGCCGCUCCGCCUUCGUCGCAUCCGUCGUCUCGCCGCCACCGAUCCCCGCCGCCGGCUCGCCCUCAACCAAUCCCCAUCACCGUCGUCGCAUCCGUCGUCGUCCAGGAUUUACGUCACCGUUCCGUCACCGCACCCACACGAUGAUCCCCGGCGACGGAACGGGUCAUGGUGGCCUUGGAGGAUACUCGGGCCCGACGAGCUCUCGGCGUCUCAGGUAAUGUCGCCGAAGACAAGAACUCCGGUCAAGCUCCUCGGCCGUGAGGACGCAAGCGUGAUUGAAUGUUCUGUGGAUUGGAUUGGGAGUUGUUUGCUCAAGGAGCAAUUAGGGAAUAUUUUAGUUGGUUGCGGCUGCAAAUACCAUCAGAACAACAAUGGAGUAUUUAACAAGAGCCAACAGCCUUUUGUUUCAGAUGAAUUCCCUCUGAAGUCACCCGUCAAUUGACUAAUGUUAGACAAUCUACCAUCUAGAGGAGAUCAUUCCUGAACCCAAUAUGGUGAUAAGCCGCCUCUGUUGAUGUGUUACACUCAUUGUUACUUGUUCUGAGGUGUACACCUUGCUUGCUAUAUUGGAAGAAUGAAUUUAAUUCACAUGGAUAUAAUAUUUUGCAAUUUUUGUAUAUGAAAUUAUAUGCAUGUUCUUGUGAUGUGAGAAGGUUAAAUUCCUUUGUGGGAUGCCCAUUUAAUUUCUGGUUGCUAAUUUUACUGAAGAAUGAGAGUAGGUUAUGAUGUCUUGGGUUUUGAUAAGUAGGGUGUAAAUUUUUAUAGUACAAUAAACAUGCGUGCUGGUCAUUCUGUUAUGUGGGAUUGAAACAAGUGAUGCUGGCAAUUCAGGUGCAGACCAGCUUUUGGUUCUGUAAAUUAUUUUCUCAAUUUAAAUAGAUCAUGUAUUGUGAUGAUGCGAAUAUAAUAUUAUGAUGUUAUCAUGUGUUCAACAGAGCUUAAAAAAUACUCACAAACUGGAUUCUCGUAGUUAUACAGUUUAAAUAAGUUAUAAGCACGAUUUGGGUUUGAUGUCUUCCAUUUGAUUUUUAGCGCUCCUCCCUCUUGCUCCGAUCUGGCCUUAGUGAUGCCGCCCUGUUUUCGCGGUUGAUCCCGGCACCAGCCCCUUCCUCUGGCCGCGUGCGAGUUCGAGAUUCCAAGUCCCGGUGGUCGGAUUUCUCAACCCCGGCACUGGCCUCGCACAGGCUGCGAUCCGCUCGCCAACAAGGUAAGUCAUUAUUGGGAUGUUUAUAUCUGAAAAUUUAGAUAAUUUCUUUUGAACUUCAUUGCUUGGUCAACAACAUAACCCAGGAAACCAAUUAAAUUGAUAGACAUGUUGUGUGCUCUCUUAAGAGAUCAACAUCCAAAUUGACAUCCAAGUUAAAAGAAGAAUUUAAUUAUCUAAAUCAUGAUGCCAAUAUUGAGAGCUUCUUUUACUUUCCGUUGUAUACAUUUUCUGUGAUGUGUACCGAAGGUUAUAUACAUAAUGAGAUUUUACUUCAAUGGUGGAAUUGUGCUCUAUUGAACCACAUGGAAAGUUCUGAUUUGUGCAGUGAUAAUUUUUCCCUUUAAAAAGUCAAAUUUGGUUUACAUUUUUAUUCAUGACACCUGAAUAUGUAGAAUGCCAUGCAUUAGUAAUGUGCAAGCACUUUCAAUGUAUUGUCUAAACUCUAAAGGAACAACUUACCAGUUUAUUAGUGAAUUUAUGAAAAAAAAAUCAGAUGUUUAAUGUCUGAAUAAAUUCAGAUUCUCUUCUCUGCUUCAUGCCUUCAUCAGGAUGAGGUAGUUAGUGUUGUACUGUAGUUGACGAAUCGAUUUGUUCGCAUCGUGAUAAGGCGCAGAAGGUAAGGCGGAAAUUGCCUUGGUUUAUCCUCUCCCCCUAAAUUUCCUCUGCUGCGAUUGGUUGAUUGGUUAAUGAAAAACCCAAUACUUGCAAGCAGAUUCUGAUUAGAUUCUUAAUUAUUGGGAUUUUCUAGAGUUAGUUUAAGGAAAAGUGAGUUAAUUAUCGACGAUGAAAUAUACACUUCCAUGAUUAGAAUUAUAUAUCGUAUAGACAAAUAUGUGUAUGUAUUAAAAAUAUCUGACAAAUUGGACUGUAUGAUUAUAAUGCCUUUCAACCAUUGCUUUGUGCAAUGCUCAUUAUAUCUCCCGGAAAUUAAUCGAUUUCUGCUUUUGUACCAUGUGCAAUGUUUACUUUUAAACUGCUCAGGUUCAUUCUAUCUUAUUUUCUGGUGCUUCUGAAGCGAUGUAUAUUUCUUCAUUUUUAAACUGCUCAGGUUCAUGAAUGCCACCAUCACUGAAUGCACAUCUGGUCCUCCCUUAUUUUCGUUCGUAUGUAGUAUGUACGUAAGAACUAACAAGUUUAUUCAUUCAAAGAAAAACUAACAAGUUUAUGUUAAGCUUCCUUUUUAAUAAUAUUUUACAUUACUGAUAUUUAGUGCAGUGAAAAAUGCUGCAAAUCUCUGAUAUUUAGUGCAGUGCAAAAAUGAUACAUAGCUUGAUUGGAUGCUCUUUCUCAUUAUGGCCAACUGCUUGAUGGAAUUUUUUCCAUGUGAAAACAAAUGUUUACUCUGUUUCAGGCUUGUGUAGAGAAGAAAAGGUGGAAUUGUGGAAGGUAAUCGCGGGGAGUUUUGGUUCAUUUUUUGAAGAUUUCUCUAAUUGGUACGUACUAAUUAACCAAUUGGAGUUUUGGUCUCGUUACUCACUGUAAAAACAUGAUGGUAAAAAAACAGUUUAAUCCUAUUGGUACUCUUUUAUCCCAUUGAACAUUUUGUCGUUGUGUCAUUGACUACUAUCAAAAAGGAAAAACAGUGGAUGACUCUUUCAGGAAAUAUAGGAUAGCCCCAUUGAUGGCACAUUUUGAACCGUUCAUGAUCCCUGAUUUAUUCUCUUGACCAUAUUCUGCACUGCUAUGCUUGCUAAGUAAUACAAAUAUAUUUAUAUCCCUGUAGCAUGUCAGUUACUCUAUAAGACAAUUUUUUUUACAUAACUAAUUAACAUUUUUACUAAACUCUUUUAUUUUGACAAUCACUCUAAGACGUAUGCAAUUGCGUCUUACGAAAGCAAGUGACCCUGAGAGCACUGAUCUUUGUAAAGAUGCACACAGCUUACUGCAGGAGAGGAUAACAAAAUAGAAGUCUAUAAAAAUCUAUAGAAGGGAUCAAAUAUGCUUGACUGAAUGAUAGAGAUGGAAAAAUGAAGAAGUGAUGACUGUUGUUUCACAAUGUAUUCAUUUCAUCUAUCCUAUAAUUGUAGUGGUGUGUCAAUGUGUGAUACUUCUAGAUUUUCCCAGCUCCAUUUUGCCAGCUCCGUGUGUGUUAAUGAUUCAGAAGUCGUGGAAUUGCUUGGAACAUGUAAUUUAUUCUCAACCAUUUUUUGUGGAAGUGUGGAUGUGCAUUGUCUAAUAUAUUGGUAUUGAAGUGAUUAAAUAUGAUUAUUGAUGGUUUUGAAUUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
46.14%
HE_num:
HEP:
53.66%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.49
Avg Expression:
10.08
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.15860440961383 | 0.000736851579757052 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.32195100835924 | 2.85033716188789e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.01505944000256 | 0.00068293090668768 |