Chr:
Chr1
Start:
24392783
End:
24393529
Strand:
+
Ref_name:
LOC4326646
Sequence
(XR_001540053.2):
ACGUUUUGCUUCUUUUCUCAUCUUAUAAAUACACCACACAACUCCAUCCCUCAUACACCAAACGCACACACAACUUAAGAAUCGAUCAAUAGAGCAUCUAUCAUUCUGCUGGACAAUAACACCCGUUUCAGUCUCGAUAGCAAGCAGUUUCAAUUGGUUGAAUUUUGCUUCAUUAAUUUGCUGUGACCAGAAUGAGUUCAUCAGACAGCAAGCCAUGUGGUGGUCUUAAGACGGAGUGGCCGGAGCUAGUUGGCCUCACCAUCGAGCAGGCCAAGGCGAAAAUCAAGGCUGACCGUCCAGACCUCCAAGUUGAGGUGCUCCCAGUAGGAACCAUCAUCCUGGGAGUGGUCGUCCCGAACCGUGUCAUCCUCUGGGUCGACACUGUGGCCGAGAUUCCCAAGAUUGGCUAAUUAGUUUUAAGCUGUGUCUAGCUAUAAGUGUAAUGAUACAAUAAUGAAAGGUCCUUGCUUUUUAUAUAUAUCUGAUGCAUGUUGUAAUGUGAUAAAUAAAGAAGGUAUAAAUAAAGAAGAUAGUAUGUGCAUGUACGUAUGACAGUUUCAUGGCCAACAUGCGCACAUGUGAGAUUGUAAUUUGUAAGAUAUAUUUUCAUGAAUCUCUCACGAUCAUUUGCAUUUAGCAUUGUCAUUUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
11.99%
ME_num:
MEP:
18.7%
HE_num:
HEP:
69.11%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.93
Avg Expression:
833.72
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.68539183471736 | 3.7303000712692e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.9705562721964 | 2.7008313036012e-12 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 6.23112120538951 | 1.78384493293438e-44 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 7.81794482375104 | 7.01263975498316e-123 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | -2.56810621006555 | 0.0247110911420894 |
| 6 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 3.7997284368219 | 1.3397236902566e-60 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -2.37682883194285 | 0.0465891511321851 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 6.2564298735763 | 5.72073009423724e-85 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 6.65150309527589 | 1.74670395634662e-18 |
| 10 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 2.92556425585136 | 2.50930385926899e-10 |
| 11 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 2.47077656487202 | 0.000640228381334312 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 4.30811494925854 | 1.77948146064987e-86 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 3.14791477725851 | 3.08838989893347e-10 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 4.33675215577306 | 3.76344954633229e-36 |
| 15 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 1.36156183048228 | 4.01425976568763e-45 |
| 16 | 9311 // leaf // control--/--9311 // leaf // salt | 3.2883381224885 | 9.25232047878075e-46 |
| 17 | Baldo // leaf // control--/--Baldo // leaf // 100 mM NaCl | 3.13098447944706 | 1.09075807268785e-09 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 8.49822292657482 | 3.61838090783023e-165 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 4.0272138673528 | 7.7110157562044e-11 |
| 20 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 4.75882138024862 | 1.63183841120155e-50 |
| 21 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 3.8536953117566 | 2.23225534131823e-48 |
| 22 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 2.91194567293533 | 1.52786702372898e-14 |
| 23 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 3.08433977028268 | 6.28437584051151e-07 |
| 24 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 8.38080213699949 | 1.190667961004e-20 |
| 25 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 4.33175140515724 | 1.05358363394998e-37 |
| 26 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 8.38072377773863 | 1.19958718659519e-20 |
| 27 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 8.38052989114937 | 1.19742068665055e-20 |
| 28 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 9.7732341084133 | 4.43414255281977e-114 |
| 29 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 7.98273419289991 | 1.30527706759997e-29 |
| 30 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 3.71294007575136 | 0 |
| 31 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 4.13934156876008 | 3.35738558580056e-05 |
| 32 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 7.0083894576812 | 9.71902070654402e-78 |
| 33 | 9L136 // leaf // control--/--9L136 // leaf // salt | 3.27742518976407 | 1.34461748737769e-30 |
| 34 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 6.17863546422678 | 1.04593659410055e-12 |
| 35 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 5.04967170178707 | 8.55032001423209e-51 |