Chr:
Chr1
Start:
14197285
End:
14199514
Strand:
+
Ref_name:
LOC4326275
Sequence
(XR_001542480.2):
UUUUUGCGAGGGUCUAAACAGCGGUUAGGGAUCGGUCAAAGAAAAAAAGAAAGGGAACGCUCCCUUUUGUGCUCCAGCGCGCCGCCGCCUUCUCCCGCCGGAGCCGCUCGACUCCUCCUAGAGCGCGCCAGCCCGCUGCCGCCGCCUCCCGCUGGAGCUGCUCGCCUCCUCCUCGCGCGCACCCGCCGGAGCCGCCUCACCCUACCCGCCGCUGCCUGCUUCCCUGCUCGCGCCGCGCCGCGCCGCGAUGGAGAGGAAAGAGAGGCGGGUUCUGCACUUCUGCUCCCCCUACCCCGCUGACUCCUCGCGCGCGCCGGCGCGCGGGCCGGACAUCCGGGUGCCGCCUGCCGGAAAGGGGAUAUGAGGUGGCGGAGAGUCUUGCUAGGAGGAGAGGGGGCCAUUGGAGGAGGGCUGGAGGUCGCUGCGCAUGGCCCGUCAGCAUCGGCGAGGUUGACUGGGCAAGAGGCGAGCGCCAACAGAGGUGCCGGGGAGGAGCAGGCCGCCGGCGCGGUCAUAGGAGAGGGUGCCGACCGGAGGCAGAGCCGACGACCCCUAGGACCGCCACCUGUGCCACCACUGCUGUCAUCAUCAACAUCCUGUAUGAUUUUUCAUUGUUGUUGUUAUCAGGGAUGCGCUGGAACGAGGGCACAGGACUAGGGCCGUUGGACAUCAUUCAUGCUAGCAGAUAAGGACACCAGCAACACCAGCAACAGGUAGAAAACAAGAUUUCUACUGAACUUCGUCGAUUUAAGCAAAGCUUUUGAACAUAUGGUCAUCCAUUGAGGCUCCCGCAAUUCCAGUUUGCAAAGCUUUUGAACAUAUGGUCAUCCAUUGAGGCUCCCGCAAUUCCAGUUUGCAUGUUCUGCCAUCAUUUUGGAUCAUAUUUUCCAUGCUUAUGGAAGGACAAAAUGAACUGUAGUUUUUGUUGGCAGUGAUCUCCAUUGGAUGUCCCGUCUCUUAGCUGGCCGUCAAUGAUACAACCAGGUCACGCAUGAGGUAGCAGUCCCCUCCAACCCAGUUGCUGAAGACUUGUCUCAUCUGGUUUCAUUGAUGCGUGCGAGUGAGGCACAUGCUGUCCAGGUCAAGUAAAACAUCAGCUUAUGAGAUCUGAAAGCAACAAAAGGGUACCAACUUUACACCCAUGUAAAAUACAGUGAUUUCAGUCCGUUCUAUGUAGCUAUUUUGAUUUCUUCACCUUCACACUCUUAUGAGAGCUGAAAGCUAUAAGCAGGGUACCAACUUAAUACCUAUCAGAAAUCCACAGAUUUAUGUCCUUUGUUUUAUCAACUUAGACUUUGUUUCAAUAGAGGACAUCAAGUUUGUGCUAGAAAUGAUAAACACCAACUGGAUGGCCAUGUGGGACAUCAAGAACAUCAUACAAGCACCUCACCAGCACAUGGCUAUGAUCAAGAGGGGUUUGCUACAGACCUAGAGUAAAUCCAUUGAACUUUGUUGAACUUUAAUUUUUAAUCCGCGUGUACUGGCUCUAUAAACAGUGAAGAUGGAUUUGUUGGGCAUGAUCCUAUUACACGGUUUGAGUUUUUCUUGCUCCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
15.24%
ME_num:
MEP:
6.1%
HE_num:
HEP:
78.46%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.80
Avg Expression:
45.24
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.61580693487646 | 2.28971666523404e-12 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.85048720028896 | 6.35217458460411e-08 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.50809362831062 | 1.18566203281509e-09 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.22451685486854 | 1.47310267766607e-06 |
| 5 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.27370369771565 | 0.000424254939065008 |
| 6 | 9311 // leaf // control--/--9311 // leaf // salt | -1.07167785679306 | 1.0133826698722e-07 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.31669388129713 | 1.96664171187045e-09 |
| 8 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.12371783815114 | 2.89148651705408e-06 |
| 9 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.93086085487202 | 4.35481763710627e-12 |