Chr:
Chr1
Start:
1126507
End:
1127402
Strand:
-
Ref_name:
LOC4326032
Sequence
(XR_001547406.1):
GAAAAAGAAAAGGAAAGGCAAAAUGGAGGGGGAGCAGCUUCUUGUGUUUGUCGCCGGUAGCGGCCGGCUAAGAGCAGGAGGAGGAGCUAACGGAGGCCGCCGAGGAAGACGCUGGCCUCGGAGCGGGAGGAGCUAACGGAGGCCGCCGAGGAAGACGCUGGCCUCGGAGCGGACGGGCAUCCGGCGGCUGCGAGCUUUGCGGCCGGCAUAUCCAGCGAGGGAGGCGAUUGCGACGAAUCGGCCGGGAGGCGCCGGAUCUGGUGGCUUCGUCACCGCAGAUGGCCGGCCGAGCUCAGGACGACUCGGGCGCCAUGUCGAGAGACGUGGUCGACAGCGAGAAGCGGGCCUGACUCGCGAGCAUGACGCCAUCCCACCAUGCUGCAACACAAUCAACACCGGUCCAAAGAAACAGAGAAGAUACAUGCCUCCAUGAGGCCUGAGCAAGAUACAAUGACAUUCCGAUACAAUGACAUUCCUUCACAGCUUUCCAAUUAAAAUAUCUCCAGAUUGUUGCUUCCUACAUACUAAACAUAAGAAUGCAAUGAUAGUAUGAAGAAUAAAAUAUUAAGUCAAUUUUUGAUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
52.24%
ME_num:
MEP:
43.29%
HE_num:
HEP:
4.27%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.88
Avg Expression:
10.30
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | 9311 // leaf // control--/--9311 // leaf // salt | 2.69504986374017 | 0.047540298384358 |
| 2 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 4.43243441303407 | 0.00874445192195617 |