Chr:
Chr1
Start:
20746726
End:
20750490
Strand:
-
Ref_name:
LOC4325852
Sequence
(XR_001542967.2):
CCCACAUCCCAUUGCCCGCACUCUCUCGCUCUCCCACUCGCACCUGCGCCGCAUCCCCAAUCCCGCUCCCGCACGCGCUGACGCCGGAAACUGCUCCGCCAUCAGCGCUCCCAUCACAACAGCCUCGCCGAUCUGCCCCGCAGGUGCCGGCUCGCCGCAGUCUACAUCGCCGCCCACUCCGUCGUCAUCGAAUCCGUCCUCGGGCAGGAAUCACGUCGCCGCCGGUGCCCUCCGCGCCGAUCUGUUCCUCACCGCCACCGAUCCCCGCUGCCGGCUCGCCCUCCACCGACCCCCCGCCGGAAGCCCUUCUGUCGCCAGGUCUCCGCCGAUGCAUUCCACGCCGAGUUGCUCCUCGCCGCCACCGAUCCCUGCUGCCAGGUCGCUGUCGACGCCUUCCGCACCGAGCUGCUCCUCGCCGCGCCGCCACGGCGACGACGAUAGACUCCUCAGCAAGUUGCUCCUGCCGACCACCUAGCUAGCUAGCUAACGUCUCGACGAUGUGUUUGUGGCUAGCUAGAGCUCUGAUGCGGCAGCUUGUAUGGUGUGGCUGGAAGACGACGACGCAGCGUGUGCGAGAGGAUGGGAGUCACAAGCUCCAGCCUUAAGGGAGGGGAAGGAGCAUAAAAAAAAUUGAGGGAUGAAAAGAGAAAUAAAAAGUUAAAAACAGAGAGAAGACAAAAUAGAAAAAAAUUUGGAAGAUUGGAAGAGAGAUUCAGAAAAUUUAAUUCAGUGGCUCAUGACCGUUGUUCUAAAGAUAGGCCUGCAGUUCGCUACCGAGGUGCAGGAUAGCUAGGAAGGAGAUAACUGGAGCAGUACUUGUGUCAUAGACUGAUAGACAGUGCCGAUCGACGAGACAGUUGCAUCGAGGAUACUGGGCUUUUGGUCCCAUAGCUUCAAACAAAAAGACCGCUUUGUAGUUUCAAUCUGGAAAUCCAUUUUCGUUGGUCCCAUGCGGUGAAGAAAAUUGGGCUCCACUCUGCGCCGGCAACCCCGGCGAGCAACCUCUGCACCGCCACCUCCCCCGUCGUCUGGUCUCCACCACCGGUAAGAAAUUGCAGAACCCCACGUUUAAUUUAAUUAAAAAUCUUUUCUGUUCAGAGCUGCAGAUUAGGUGUUUAAUUUCUUCAUGGCACCCUUCAUGCAGAAGGAAUUACUCAAAUCAGACACAAGUGAAGCUAUUUGAGGGAUCACUAGCUGUACCAAUUUCUUUCCAGUUACAUUGGUGAACAAAAUUGAUAUAGGUACUGCAACUAGAUCAGUCGCACAGAACUUUCUCCAAAUUGGAUUGGCCUCAUUCCUGAUGACUACAUAAACAUCAUGGAAAAAAUUGUAUGCGAUGUGUGUUUGAUGUUAGGAAGUAUGUGAUGUGGAUUUGGGUGAUCUUACCAUCUUGUUGGCUUUUACAUGGCAUGAUUGACAGUGUGUAAAUAAAAUUAUUUAGUGCUCUGUAAAAAUAUAUGUUGCUUGUUGAUGUCUUAAUGGGCAUGGAUAACAUUGUCAUCUUACAUAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
19.11%
ME_num:
MEP:
23.78%
HE_num:
HEP:
56.91%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.79
Avg Expression:
23.34
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.21057594479426 | 0.0103421756654127 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.41311884282317 | 0.0165017827112143 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.12532052039838 | 3.09808498645166e-05 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.4450887804487 | 7.54693348191463e-07 |
| 5 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.73230293617199 | 6.80932217420718e-09 |
| 6 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.16227635452014 | 0.00165643924003205 |
| 7 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.16236374643553 | 0.00171706658771095 |
| 8 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.16245540223272 | 0.00166261739004362 |