Chr:
Chr1
Start:
11075066
End:
11077908
Strand:
+
Ref_name:
LOC4325783
Sequence
(XR_001544809.2):
CCACAUGCGCUCGCUUCUCCUCCCCCAUCCGCACGCGCCAGUUGCCGUGCUCGCUUCUCUCUCUCUCCCCCCCCCCCCGCAUUCCCCGUGCGCGCCAGCCGUGAGCCCACGAGGCCAUUCGCACCAAGCCAUGAAGCGCCGCUCAUCCGUUUGGGAGACAGAUCGGUCGUGGGAGGGCAAGUGGGUGCGAUGGCGAUCCGUGCAGCUCGAUGGUGGUGGGGGCCGGAGUCGCGUCACGCCCCGGCGCCAUCCGCCCCGCCGUGGCGGCGCAGGCGGAGGAGGCGAAACCCUAGCGUGGGGAGAUGAGAUACAAAAAUAUUUGUUUGGCAACUUGAGGAGAAGCUUGACAAUUGAAGCAGAUAACCUUGCUCGGUUUUUGAAAUUGUAUACUACACUAUAUUCCUGUUUGAUUUUUCAUGUCUUUCAAGCAAUAAAACAGAGCUCCACAUUAUUGGUUUAUGAGCUUGAUGCAGUUUCAAGUAUUUCUUACUUGAGUACAUAUUUUGCCAAUCAAUUUUUUUUCAUGUUCAAACAAUACAAUCUGAUUGUUCAUACUUCAAUGCACAUUUCAUGUUUUCUAA
Sequence
(XR_003241967.1):
ACAUGCGCUCGCUUCUCCUCCCCCAUCCGCACGCGCCAGUUGCCGUGCUCGCUUCUCUCUCUCUCCCCCCCCCCCCGCAUUCCCCGUGCGCGCCAGCCGUGAGCCCACGAGGCCAUUCGCACCAAGCCAUGAAGCGCCGCUCAUCCGUUUGGGAGACAGAUCGGUCGUGGGAGGGCAAGUGGGUGCGAUGGCGAUCCGUGCAGCUCGAUGGUGGUGGGGGCCGGAGUCGCGUCACGCCCCGGCGCCAUCCGCCCCGCCGUGGCGGCGCAGGCGGAGGAGGCGAAACCCUAGCGUGGGGAGAUGAGAUACAAAAAUAUUUGUUUGGCAACUUGAGGAGAAGCUUGACAAUUGAAGCAGAUAACCUUGCUCGGUAUGUCUACUGUUCAACUCAACAUAUAUUUUUCAUAUCUUCUGUACAUCUCUUCUCUAAUUUAUCUUUGCAAUAUCAUUUCAUAUUCCAGUUACAACUUAUGGAUAUACUCCUACAUUUAGCAAAUAUGAUAGUUACUUCCGAUAUUUGUAAAUAUAUAAUCAGAAUUAGUUAAUUCUGAAUUGAAUUGGUUCUUUGCCCUGAGUGCUGAUUUUAGUUCCUCAAAAAAAGUAUCUGAAUUUAUUCUAUUUGGUAAGCCUAAAUUUGCCAUGAAUUUUGCCCACAUUCUAUUUGAGCAUACAUUAUGAUUUGAACCAAGUAGGAGCACUGUUAAAGUUUUGUGAAUUGGUUUCUCUAAACCUAAGAAAGAAUCCCUACCCUAUGCACUGUUGUUGUUUCAGUUUCUUAAGAAAGGAUUUCUAAUACUUGCAGUGGAUACUUAUAUGUCCUAUAACUCUAAUUAAUUUGAGCAGUUGGAGAGCAACCAGAGGAUUGGUAUAUAGAUGUCCUGACAUAGCGAGACUAAUGUUGUGAUUAUGACUAUAAAUUUGAAACUUCUUGCAAUCCAAAUGAGUAUUCUGUGUUCAGUGCUUUUAGCAAUUGAUGCAAAUAUCACAUUUAAUUGCUCAAGUAGCAGAACUAUUCACUUAUAUCUCGAUUCUUCCAUCUAUAUUUUUUAUACAUUUUAAUAUUGUGUGCAUAUAGCUAAAUCUAAAGGAGUUUUUGUUGUUUCUGAUAUUUGCAGGUUUUUGAAAUUGUAUACUACACUAUAUUCCUGUUUGAUUUUUCAUGUCUUUCAAGCAAUAAAACAGAGCUCCACAUUAUUGGUUUAUGAGCUUGAUGCAGUUUCAAGUAUUUCUUACUUGAGUACAUAUUUUGCCAAUCAAUUUUUUUUCAUGUUCAAACAAUACAAUCUGAUUGUUCAUACUUCAAUGCACAUUUCAUGUUUUCUAAUGUGCCCGCGGCAACGCGCGGGGCUUCAUCUAGUAUCAAUUAGAAUAAUAAUACCACACUCCAGAGCAUGCUAAUCUGACAAUUUGUUUUGAACGGCAACAAAAGCUUUGCCAUUUAUAUUAACAGAGAAGGAGAAAAAGGAAACACAUAUACAGUGGUACUAAAAUUCCACCCCUGCAAAAGAACCGCGAGUUAGGUGAUCUCUCCCAAAACAUGUAAUUCUCCAACGUCGCAGCACCCGCUUUGACCCAAGUCCUAGCUUCCUCUUUUUAUCUUAGCCACAAUCGUGGUAGGAGUUGAUGCUUGGUGACAGAAGAUCUGUUAAUGCGACAAUGGGAACUAUGGGGAUUACCGAUUACAGGAAUGAGAAUGCUGAAACAUCAAUAGUAUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.02%
ME_num:
MEP:
63.82%
HE_num:
HEP:
34.96%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.62
Avg Expression:
12.52
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.26516586699104 | 0.00426655943798001 |
| 2 | 9311 // leaf // control--/--9311 // leaf // salt | 1.0431024552128 | 0.000166438996154376 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.13016288556938 | 0.00212628981396661 |
| 4 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.62576953781903 | 0.00691036532337096 |
| 5 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.62568798893988 | 0.00709627121314277 |
| 6 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.62556023436989 | 0.00694849770056648 |
| 7 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.33363002752985 | 1.81647442246985e-08 |
| 8 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.36313979998154 | 8.21556123242613e-05 |