Chr:
Chr1
Start:
4665711
End:
4669960
Strand:
+
Ref_name:
LOC4325665
Sequence
(XR_001544338.2):
UCAAACGGAAACUGCCCAAGUAACCCAUCCUUUCCAUCUCCUAUAAAUACCGUACCAUCUCCUCCACAGCUCACCAUCCAAAUCAACAGUAAUGUUCUACAGUUAGUGAGAUGUAGAGAGAGAUAUGGCUAGCUAAUCCAUGAGAGAGGUCUAGAUAGAGAGAGGGAGAGAUGAUCAGUUCUUCAGAAGAGGCUACUACUAGCUAUCUAGCUUCAUGUUUAACUCUUCUUGGUUUGUGUUUUUGUGUGCUUGUUGGAGUUGUUAGGAGGAAGAGAGGGGUGAGAGGUGAGGCUGACAGAAGAGAGUGAGCACACAUGGUGACUUUCUUGCAUGCUGAAUGGACUCAUGCUUGAAGCUAUGUGUGCUCACUUCUCUCUCUGUCAGCCAUUUGAUCUCUCUUUCUCUCUUUCUCCCUCAUGUGUUAUACUGUUCUCUCAUAUCUAUCUUCUUUGAGGUAGUAAUAUACUUGAGCAAAUUAAGCUGCUUAAUUAUUUGUGUAUGAUGAUCAGCUGCUGAUCCGGCCUCAUUUCUUGCAUAUAUGACCACAACCACAUACAUGCUUGUUCAUUUUUUUUCACAAAGAAAGAGAACAGUUUAAUUUAAUUUCUUGGGGUUUUUGGAUCAGUUAAUUUGUCUUGAGAGGGGAAGAGAUCUCUAUGGGUUUUGGAGGUCUGACAGAAGAGAGUGAGCACACACGGUGCUUUCUUAGCAUGCAAGAGCCAUGCUGGGAGCUGUGCGUGCUCACUCUCUAUCUGUCAGCCGUUCACCAUGCCCAAUAUGAUUAAUCUCCUUCUCUCAGUUGACAGUAAUUUCUUUGCCAGAUCUCCUGUUAAAUUUUCUGCCUAGCUAGCUAUUAUGCACAUGCUUAUUAUGAUGAGCCUGCCAAUAUCAUCUCCACGGCAAAACACAAACUAGCUAUGAUUUGAUUCAUUAUAUUUCUUUUCGCUGUUUAAUUAAUUAUAUGCAGGCAUACACUAGCUAGUUUCCAGCUAGUACAAAGACGAGACGAGGUCGUUCUGACGAUUUUCAUAGUCGUCAGAAGAAGGUGUGCAUUGGUUUAAUUUUUGUUCUUGGCUGUCAGACUAGAUCAUCUCUGAAUGAUCAAGAGCCGGAUCAAAUAAUUAUUGUGAGCACCGAAAUCGAUCAUGCGUACUCUCUCUGUGAAGUAUUUCUGAGAAAUAAUAUGAGUGUAGCUAGUAUAUAUACUCUUGAAGGGUGUCUAAUUAAUUGGGGUCUCUAGCUAGCUCCUUCUCUGAAUCUGUCCAUGAAUUGAAUCUACUAUGUAUGUGCUGGUGCUUACUGUUAUUUCAUGUACUACAUAUAAUUGAUAAAUCAAUUUAGGCUUUCAGUUUCUUUAAUUUGUGAGCACAAGUUUACAUUAUAUUGUAAUUGGAAUCUGUUGCAAGUACUAUAUACUGUUUUUUUAUGCAUAGCAGUUGAGAAAUAGAAUCCAAUAUACUUGUGCAAUUUAUUCUAUGCCACCUUAAUUAAUUACUUCUUCCUAGUAAUGAAGUGCUAGCUUCGAUCUUUCAAUAUUACCUGUCAAUCUUAAUUUAUACUUGUUUAAUUUGACUGUAAUUUGCCAGCUAGAAUUAAAUGUACAUUAAAUUGAAUUCUUCAGUGUUGUUCUUGUGAAGUUAAAAUAAUUUCUGAACAUUCACCCCUCUAUAAUCAUUUGUCUAUAUAGAAAAAGCAUGAAGCAAUUCUAAUCACAAAAAUACAUGGAGUUGUCUAGAUCAAACAAUUAAUUAAUCAAUCAUCAAUCAAACCAAAGACGUGUAAGGUCAUAUAAUACAAAUUUAACUUGACAAGUUAAUGAGUAGAAGAUGUAUGCAACGAUAUUUUCCCCGUAGCUUAUACUACUGUCGAUAUAUGCGUGUGACCAUAGUUCACAAGCCCUGUAUUUUAUGAUUUCAAAUGUUCGUUCAUACAUAUACACUACUACAAAAGCCCUUAUUGACACCGAUUGAGAACCGACCAUAAAUACCGAUCGAUUUUCCAGCCGGUGUCAAUUUAACGGUACUAAGGGCACCCACAAUGGUUAUCUAUAGGCUCUCUAUAAGAUAUCCAUGUCAGCAUAUUUUCCUACUUGAAAGAGAUUAAAUGAAGAGAGAGAGAGCAAAGCUAUCUACUAACCUGGAGAUAGUCUAUAGAGAAAAACGAGACAAUGUAUUAGAAAGCUAUAGAUACCCAUGUAGACAUACUAUUGAGAUGGUUUACUAUUAAUCUAGUCUAUUGCUGAGAUGUACAUGUUUUAUAGAUAGCACCUUACUUUACCAUUGCGGGUGCUCUAAUGCACAACCAUAUAGGUACCGAUUUUAGAAUCAACGCCUAUAGAGAUUAUCUGCUAUUUGUGACUAUGUGCUAUUUGCUAUUUUUGAAACAUGGAGCAAUUAAUCUGUUAUAAUAAUCGGAUCGGAUGAACAAGUUGAAACAAAAAGGGUCCAAAUUAAGCCAUGCAGGUUUUUGCUAUAUAGUCGAGCUGUGUUGAUAGUUGUAAAAAAAAAACUGUGUUGAAAUCGUGAAAGUACCCAAGUUUGAUCUGAAAAAAAAUCGAAAAAGAAGCCCAAGUUGGGGCAAUGCAGGCACACGCACGGCGGAUGGAUGGUCCGGUCCACAUGUGUGAGAAGGGAAGCUCCACGUUCCUCCGGCCAAUUCAGGAAAAUAUUUCUUCUACUUAGCUUCAUCUGGGCUUCAUCCUUUUGGGGCAAUCUCUGUUUGAGCCAGCAUCUCAGCUAUGCAUGGGCCAGCAGCAGCUCAGCAUAAAAUUGGUCCCUGAAAAGUGUAAAAGUUACAAGUGGUUAACCGGUUACUUGUCCAGCAGAAAUGGUUUGGUUUGGUUUGCCAUCAUGUCGAAUGUACUUCUGGUUCUUAAAUAGUACUCUCUCCGUUUUUUUAAAUUAUAAGUCAUUUUGUUUUUUAAUUUUUUAUUUGAUAAAUUUAUAGAAAAUAUUAGCAAUAUUCACAACGUUAAAUUAGCUUCGUCAUUACAUGUAACUUUGAUAACAUUUUUGUUUUGUGUAGAAAAUGUUGCUUUGUUUGAUUAAGAAAAAAGUCAAAUCAACUUAUUAUGAUAUAAAAUAGAGAGAGUGUUCACCCUCUUAAGUACAACACUACGUACCAAAGUUAUAAUCAUGGAAUUGCGUGCUUUUUAUGGUUGCGAAUCACCUAACAUGUAUCAAACACUUUUUUCCCCUCCUCGCCAAAUGAUCUUUUUAAAAACUUUUUGGUAGACUUUUCUGGCCUCGGAUAAAAGCGUGUACCUUUUACUUGAAGAAAAAUAAUAGCUCAGCAUAUUUAAAACACUAUCUACCUUGGCCACGCCCUCCAUCAUUGUCAUUUCGAUCCCCCGUCAUUCAUGUAGAAUUCGGGUUGAAAAAACUACAAGCUCCAUUUUUUAUAUAUAUGUUUAUCAUAAUUUGCAUACGUCCCUUUCAUAGAUCAUCCUUUUGUCAUCCUAGCCGAAAGGGCGGCUGGGCUGACCUCCUUGGCAAGGAAAAUCAAUCGGAUGGAAAAGAACAUUGGAUUUGACCUAUUGAAAAUGAGAUCAGAAGAAGCACUCCUAAUGGUGUCAAUGUGAUGUUAGUACCCCUUUUCUGCCUAAUCUCCACCCCAGAUUCUCUCCCAGGUUGAGAAAAAGAAGAAAACCUAGAAAAAAAAAAGUGGCUUUCUGUGAUGGACGGUUUUGUUUGGCGUGUUUGGCUGUGGCCCUCUAUAUCACUGCUGCUCUAUCUAUCUAUCAUUCUAUCUCUGCACUGUGCCACUGUGCUACUGUGCUCCUGCUUUAGCCUUAGGGGCUAAUAAAACCUUGUCAAGUUGCAAUUUGUGUGGUGAUUAUGCUCUGAAAAUCUUAACAGUGCCUGGGGUGGCAGGGUCAUGACAAGGCACUUUUGCUGUGUAUCUUGGUGUGGGGUUUUCAUGUCCACUCGUAAUCAGAAAUAUUUCCACAUGUUUCUGCAUAAAAAGCAUGUGCUUCAUUAAUUCUUGAGAAAUGUCGAGCUAAACCAGGCUAAUAAUUUGUAACAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
46.54%
ME_num:
MEP:
28.25%
HE_num:
HEP:
25.0%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.94
Avg Expression:
66.19
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.06163304179396 | 3.26316309723483e-90 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 5.18612983445731 | 1.91511769206685e-42 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 6.43681569495968 | 1.27482054260369e-238 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 5.18657082784228 | 3.34040414035853e-112 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 6.55878770971295 | 2.52424649156996e-296 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 6.51639777593385 | 5.46417774350057e-235 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.5479389967564 | 1.06982076206421e-50 |
| 8 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.2592314989687 | 0.00126527598380152 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.32411603659589 | 2.35893182091562e-08 |
| 10 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -1.04207196954394 | 4.00539949568788e-08 |
| 11 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -1.38693042521696 | 0.0439335938596497 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.34005207894572 | 0.00138235003646502 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | -1.16930261196693 | 0.0454142980852697 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.05427845884755 | 0.0171086199182684 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.78423617257836 | 8.70965702725183e-24 |
| 16 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -3.0349921280823 | 0.0339931349232431 |
| 17 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 1.2292257717503 | 4.58601001787556e-07 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 5.33601358404604 | 1.3468848840575e-199 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.55857541108211 | 2.6170354340915e-216 |
| 20 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.48827413678472 | 0.000427653547840399 |
| 21 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.14536507380167 | 0.0137725658137764 |
| 22 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.51664508112568 | 0.00134836717227148 |
| 23 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | -2.42901933155851 | 0.0304567164559684 |
| 24 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.38447423486816 | 5.56641106252943e-05 |
| 25 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 4.39131804315842 | 1.16746907923336e-05 |
| 26 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.94540250700387 | 2.28585005031749e-68 |
| 27 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.42954631223633 | 1.59422466169128e-127 |