Chr:
Chr1
Start:
38082335
End:
38088769
Strand:
-
Ref_name:
LOC4325088
Sequence
(XR_001548409.2):
CGCGGCUUGCAUCCGAGUCGCCAAACCGCGGUUCGGUUCGCCGCGACCGCGCGACCCCCUUUCCUUCGCCCCCUUCUCCCCCUCUCUUCUCUCCUCUCUCUUCGCACCGCUCCUUCCCCCCUCCUCGAGCUGCUGGUAUCUCCACCGCGAGGAGAGGCGGAUGAGCGACGCCAUCCUCCCGGGUGCUUUCCGCCUCGCGGAGGGGGCGUGCCUCCCACGCCUCGCUCGAUCCGAUGAAGCUGCUGGGGGGCGCGCGAUGCGGAGCCCGUGGCGGUGGGGGGGAUUUUUUUUGGUUUGUUCAGCUGCCUGCUUCGAGCUCGCAACAUUGCGGCCAGGUGCUGGAAAGGUGAUGCCUCAUAUUCUCGUUACUUGUUAGGUGUAAGGCCAGCAGGCAGCAGCUCUGUUCAGGACACCACUUUCUACUAUAUGGCUGCCUUUCAUAGUGUAAAGCCACGACAUGGAAGCCUGGAAGAAUUUAAUGAGUGUUCGUUAGAUAUCUUAUUAUUCAUUUCAAGAUUGUCAUCUUUCAUCCCACCCUCUUUAUGCUGCACUUGAAUGGGUGCGUUCGGAAGCUCUACUCGUUUAGUAUAAUCUUCAAGUGAUAAUAGAUCAUUCCUAUCCCUUUUUUGCGAUGCUGCUUGUUCAUCUGCUUACUGUUAGCCAUUUCUGCAUUUGCAUAUAUCCUGAUAGCAAUAUUCUAGAGGAAAUGUAACGCCCAGAAGCCUAGUUUUGUCACUGACAUAUAUUCUCAUAUUGAUCCAUCAUUACGUACGUUUUGUUGACUUGUGUUAUAUUUCUAACUUAAAAGCUUGGCAAAAAUACUUGAUUGUGCAUGCAGAAUUGAGCGUGCUGAACAAUUCUGAGAAAGGAUUGCUUCCAAGGAGGAUAGAUUAACAUCAUAUCACUGGUCAGAAAGACAAGAUUCCAUGAAGGUUCACACAGGCCUCAGGUGCUACUCCCCACUCUCCCCUCAGUAUUUACAUUUCACACAUUAUGUACAGUCAUCCAACAGUUGCCAUGCGCCCAAAUUUGCCUGCACCGCCAACAGAUGAUCCUAUCUCAUCCUUGCACCUCCCUGCAGCGCUCACAUCCAUUCUGCUACCACCAUUGCCACCUCCACCACCACGACCCUUUCCUCUGCGUGGACUAGCACACUUCCUGCAGAUGAACUUCUCAGGGACAUCAUCAAAAUCACUAAUCCCUGAACACCUGGUGUGUUGCCAAACUCCACAAACAUCACAUGCAAGCAUCCUCUCGCCAUCAUCGUCCUUGGCUCCACAGGUGCAGUCGACCGUCCAGUUCUCCAACCCCCUUUCCAUCCUGAAUUGCACAAUUCUUCGGUUAUCCCCAGUGCACCUUCCUCUUACCCUCACGAGCUGGCUUGAGCCAAGCACAUGCUUCACGAGGGUUGUGUCACUAAAAUUUGGGAAGUCAGGGAGCUGUUCAACCUGGUAGCUUUGGAACAUGAGGUAUGUUUCUUGAAAGGCCCUUGUAGCCUGUAUUUUCAGUUCAGCAAGGGUAGCACUUGCUGGUAAAAGCACUAGUUCCACCGGUGGUGCAGUGUAGUCUUUUGGGUGAUCAAGAAGUUCAAUGGAACACCUCACAGAAAGUAGGAAUGGGUUCAAAGGAGCCCGUGGGGUGUGCUGAUCGUAAUGUUUGAUGAACUGCUUGCAGUCGAGAAUCUUUGCUGCUGCACUGUGUGAUGAUGCACCUAUAACCUCUGGCUGUGAAGCCAACAUGGUUUCUGGGUUCAGCAAAGCGUUAUAGAGGAACUUCAGAUCGUGCAGAAGAUGAUCAACAGAAGGCCCAAACGCAGCCGCAUCAACUGACUGGUUGGAGUUAUCUUCCAGCCUGCUUGUCAGCAGAUAUAGGAGGAGGGUCAUGAUAGUUUAUAACAAAGUUAGCCAAAUAGGAGCAACAUUCUGAACAUAGGGCUCACCUGUAUUCAAUUGCACUCGUCUCAGCAUUGCAGCGGACAGCUAUGAAAUGGCCAUCGUCCAUCAGUUUUCCACCCAGUCCUCGAAGAGAAUAGUCAAGUAGCUCCUGUGAAUCAACAGCCUUCGAUGCAGCUCCCCGAAGUGCACGCCAUGAUACCCACUGUCCAGGCUGAACAACCCGUAGGACCUUGAGCAUUGCAGUUUCUGCCCGAUCAAUAUCUUCCUUUGUCCACUUGCAGAGCACAUUAGAUGCAACUUCUUUGUGUUCAUCAGUUGUGGGUUUUGAUGUCUCGUUCUUCUUGCGUGCUUGAUGAAGCAGGUGCAUUAUGAACCGGAAGAGGUCCCGAACAGUCACAAGCUGGCGAUCAGAGAGUGCCCAGUACAGAGCAAUCGUGUUCUGCAGAGGGGUCCGAAUGGGCUGGCGAUGUGAGAAGUACAACGCGAGUUGUAUACCGGAAAGCGUAUCCACUGCCUCUUGGUAAGUAUCUGAGGUUAGUGCAAAGCUACCAGCGCCAAACUUGUAUCCCCAUUCACCAUACCAAGGAUGGCCACUUGUGAUGGCAUGCAGAAGCCUGUAUUCCAUUCCAUGCUUCUUGGAUAUGUCCAUGACAGUUACUUUCCUGCAGUGAGGUUAGUGAAAUUUUCAGGGUUAUGGCAUGCUGAAUAACCCUCUUUUUGUAGGAACGACACAUGAACCAAAACAUAUCGAUCAAUUUAUACCUCACAUGUAGCACCUUGCACAAGCGAUCCCAGAAACUCAUUAUGUCACGGCCCGUGAGACAUCUUGAGCCACCUUCACGGCCAUUUACCCUCAGAAGGUGGCCAUAACCAUUUGCAUGCACCACAGCGUGCAGCAGGUGGGUGUUGUCGUCCAGAUGCAUGUACCCGCACUCCUCCAGCUCCUCGCCAUCCAUAUCAAAGUUGCAUAGGAGGCAUCUGGAAAACAUUGCAUCCAAAGUUAGCACGAACCACAAUUAGCAUAGGGCAGCAUCAUUCGAUCACCAAAUCUCUCACAAGUUUAAUCUUUGCAUCUAGGCACGAUAAGAACAACUCGACAACUACACCACGAUAUGAAAUAAACUAGGCACAUUAUCAUCCUUCCGCCCGAAACCAAUCGUGGUGUUACAGUUGACUAUAUUUAUCUUCUCUGAAACUAACGGUGCUUGUUCUUCCCACCUUGAUUCUCCAGCGACUGUGGGAGUCCCGCAGCGGAGGCAGCAGCUGUGGCGCUUGCCGCACACCUGGUUGUUGUCGUUCUCGAUGAUGAAAUGGUACCGCUUCCCACAGACCGGGUGACCACUCCAUCCUGCAACCAAACAAAUGGCAUCGCGCAAGAUUACAUCACUGCUUCUGUAGGAUUGAAUUUUUUUCUUCUCUUUUGCAAAAGGAUUGUGACAGCAAUCAAAUGUGGAAAUUGUACAUCAAAAGCAACAGGCCAACAAUACUUGCAUAGGCUAACAGUCACAGAAGGGGGCGAGAAGAUUCAAGAGAAAUUGCUGUUGGAAACAGACACGGCGUCA
Sequence
(XR_001548411.2):
CCGCGGCUUGCAUCCGAGUCGCCAAACCGCGGUUCGGUUCGCCGCGACCGCGCGACCCCCUUUCCUUCGCCCCCUUCUCCCCCUCUCUUCUCUCCUCUCUCUUCGCACCGCUCCUUCCCCCCUCCUCGAGCUGCUGGUAUCUCCACCGCGAGGAGAGGCGGAUGAGCGACGCCAUCCUCCCGGGUGCUUUCCGCCUCGCGGAGGGGGCGUGCCUCCCACGCCUCGCUCGAUCCGAUGAAGCUGCUGGGGGGCGCGCGAUGCGGAGCCCGUGGCGGUGGGGGGGAUUUUUUUUGGUUUGUUCAGCUGCCUGCUUCGAGCUCGCAACAUUGCGGCCAGGUGCUGGAAAGGUGAUGCCUCAUAUUCUCGUUACUUGUUAGGUGUAAGGCCAGCAGGCAGCAGCUCUGUUCAGGACACCACUUUCUACUAUAUGGCUGCCUUUCAUAGUGUAAAGCCACGACAUGGAAGCCUGGAAGAAUUUAAUGAGUGUUCGUUAGAUAUCUUAUUAUUCAUUUCAAGAUUGUCAUCUUUCAUCCCACCCUCUUUAUGCUGCACUUGAAUGGGUAAAGAAAAUUUGCAAGCCAGUUUUGACCAGUUAACUGCCUAACAAUCAUGUUAUGAAAAUUUUGCAGUAAGUCUUUAGCAAACUACCCUAACAAACAUGUGCUACUAAGCCUUCCUCAUUUUUGUAUUGCAGGUGCGUUCGGAAGCUCUACUCGUUUAGUAUAAUCUUCAAGUGAUAAUAGAUCAUUCCUAUCCCUUUUUUGCGAUGCUGCUUGUUCAUCUGCUUACUGUUAGCCAUUUCUGCAUUUGCAUAUAUCCUGAUAGCAAUAUUCUAGAGGAAAUGUAACGCCCAGAAGCCUAGUUUUGUCACUGACAUAUAUUCUCAUAUUGAUCCAUCAUUACGUACGUUUUGUUGACUUGUGUUAUAUUUCUAACUUAAAAGCUUGGCAAAAAUACUUGAUUGUGCAUGCAGAAUUGAGCGUGCUGAACAAUUCUGAGAAAGGAUUGCUUCCAAGGAGGAUAGAUUAACAUCAUAUCACUGGUCAGAAAGACAAGAUUCCAUGAAGGUUCACACAGGCCUCAGGUGCAUUAUGAACCGGAAGAGGUCCCGAACAGUCACAAGCUGGCGAUCAGAGAGUGCCCAGUACAGAGCAAUCGUGUUCUGCAGAGGGGUCCGAAUGGGCUGGCGAUGUGAGAAGUACAACGCGAGUUGUAUACCGGAAAGCGUAUCCACUGCCUCUUGGUAAGUAUCUGAGGUUAGUGCAAAGCUACCAGCGCCAAACUUGUAUCCCCAUUCACCAUACCAAGGAUGGCCACUUGUGAUGGCAUGCAGAAGCCUGUAUUCCAUUCCAUGCUUCUUGGAUAUGUCCAUGACAGUUACUUUCCUGCAGUGAGGUUAGUGAAAUUUUCAGGGUUAUGGCAUGCUGAAUAACCCUCUUUUUGUAGGAACGACACAUGAACCAAAACAUAUCGAUCAAUUUAUACCUCACAUGUAGCACCUUGCACAAGCGAUCCCAGAAACUCAUUAUGUCACGGCCCGUGAGACAUCUUGAGCCACCUUCACGGCCAUUUACCCUCAGAAGGUGGCCAUAACCAUUUGCAUGCACCACAGCGUGCAGCAGGUGGGUGUUGUCGUCCAGAUGCAUGUACCCGCACUCCUCCAGCUCCUCGCCAUCCAUAUCAAAGUUGCAUAGGAGGCAUCUGGAAAACAUUGCAUCCAAAGUUAGCACGAACCACAAUUAGCAUAGGGCAGCAUCAUUCGAUCACCAAAUCUCUCACAAGUUUAAUCUUUGCAUCUAGGCACGAUAAGAACAACUCGACAACUACACCACGAUAUGAAAUAAACUAGGCACAUUAUCAUCCUUCCGCCCGAAACCAAUCGUGGUGUUACAGUUGACUAUAUUUAUCUUCUCUGAAACUAACGGUGCUUGUUCUUCCCACCUUGAUUCUCCAGCGACUGUGGGAGUCCCGCAGCGGAGGCAGCAGCUGUGGCGCUUGCCGCACACCUGGUUGUUGUCGUUCUCGAUGAUGAAAUGGUACCGCUUCCCACAGACCGGGUGACCACUCCAUCCUGCAACCAAACAAAUGGCAUCGCGCAAGAUUACAUCACUGCUUCUGUAGGAUUGAAUUUUUUUCUUCUCUUUUGCAAAAGGAUUGUGACAGCAAUCAAAUGUGGAAAUUGUACAUCAAAAGCAACAGGCCAACAAUACUUGCAUAGGCUAACAGUCACAGAAGGGGGCGAGAAGAUUCAAGAGAAAUUGCUGUUGGAAACAGACACGGCGUCAUUUGCCCCUUUCACCCCGUUAUUUCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
0.81%
HE_num:
HEP:
98.98%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.60
Avg Expression:
69.11
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.09218994680354 | 0.000515787514033972 |
2 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | 1.12232227603629 | 0.000698186204075077 |
3 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 1.03455326156842 | 0.00149381973952818 |
4 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.02910164684729 | 1.18828681508328e-05 |