OSA-LNC4325088


Function Link


Basic Info

Chr:

Chr1

Start:

38082335

End:

38088769

Strand:

-

Ref_name:

LOC4325088

Sequence
(XR_001548409.2):

CGCGGCUUGCAUCCGAGUCGCCAAACCGCGGUUCGGUUCGCCGCGACCGCGCGACCCCCUUUCCUUCGCCCCCUUCUCCCCCUCUCUUCUCUCCUCUCUCUUCGCACCGCUCCUUCCCCCCUCCUCGAGCUGCUGGUAUCUCCACCGCGAGGAGAGGCGGAUGAGCGACGCCAUCCUCCCGGGUGCUUUCCGCCUCGCGGAGGGGGCGUGCCUCCCACGCCUCGCUCGAUCCGAUGAAGCUGCUGGGGGGCGCGCGAUGCGGAGCCCGUGGCGGUGGGGGGGAUUUUUUUUGGUUUGUUCAGCUGCCUGCUUCGAGCUCGCAACAUUGCGGCCAGGUGCUGGAAAGGUGAUGCCUCAUAUUCUCGUUACUUGUUAGGUGUAAGGCCAGCAGGCAGCAGCUCUGUUCAGGACACCACUUUCUACUAUAUGGCUGCCUUUCAUAGUGUAAAGCCACGACAUGGAAGCCUGGAAGAAUUUAAUGAGUGUUCGUUAGAUAUCUUAUUAUUCAUUUCAAGAUUGUCAUCUUUCAUCCCACCCUCUUUAUGCUGCACUUGAAUGGGUGCGUUCGGAAGCUCUACUCGUUUAGUAUAAUCUUCAAGUGAUAAUAGAUCAUUCCUAUCCCUUUUUUGCGAUGCUGCUUGUUCAUCUGCUUACUGUUAGCCAUUUCUGCAUUUGCAUAUAUCCUGAUAGCAAUAUUCUAGAGGAAAUGUAACGCCCAGAAGCCUAGUUUUGUCACUGACAUAUAUUCUCAUAUUGAUCCAUCAUUACGUACGUUUUGUUGACUUGUGUUAUAUUUCUAACUUAAAAGCUUGGCAAAAAUACUUGAUUGUGCAUGCAGAAUUGAGCGUGCUGAACAAUUCUGAGAAAGGAUUGCUUCCAAGGAGGAUAGAUUAACAUCAUAUCACUGGUCAGAAAGACAAGAUUCCAUGAAGGUUCACACAGGCCUCAGGUGCUACUCCCCACUCUCCCCUCAGUAUUUACAUUUCACACAUUAUGUACAGUCAUCCAACAGUUGCCAUGCGCCCAAAUUUGCCUGCACCGCCAACAGAUGAUCCUAUCUCAUCCUUGCACCUCCCUGCAGCGCUCACAUCCAUUCUGCUACCACCAUUGCCACCUCCACCACCACGACCCUUUCCUCUGCGUGGACUAGCACACUUCCUGCAGAUGAACUUCUCAGGGACAUCAUCAAAAUCACUAAUCCCUGAACACCUGGUGUGUUGCCAAACUCCACAAACAUCACAUGCAAGCAUCCUCUCGCCAUCAUCGUCCUUGGCUCCACAGGUGCAGUCGACCGUCCAGUUCUCCAACCCCCUUUCCAUCCUGAAUUGCACAAUUCUUCGGUUAUCCCCAGUGCACCUUCCUCUUACCCUCACGAGCUGGCUUGAGCCAAGCACAUGCUUCACGAGGGUUGUGUCACUAAAAUUUGGGAAGUCAGGGAGCUGUUCAACCUGGUAGCUUUGGAACAUGAGGUAUGUUUCUUGAAAGGCCCUUGUAGCCUGUAUUUUCAGUUCAGCAAGGGUAGCACUUGCUGGUAAAAGCACUAGUUCCACCGGUGGUGCAGUGUAGUCUUUUGGGUGAUCAAGAAGUUCAAUGGAACACCUCACAGAAAGUAGGAAUGGGUUCAAAGGAGCCCGUGGGGUGUGCUGAUCGUAAUGUUUGAUGAACUGCUUGCAGUCGAGAAUCUUUGCUGCUGCACUGUGUGAUGAUGCACCUAUAACCUCUGGCUGUGAAGCCAACAUGGUUUCUGGGUUCAGCAAAGCGUUAUAGAGGAACUUCAGAUCGUGCAGAAGAUGAUCAACAGAAGGCCCAAACGCAGCCGCAUCAACUGACUGGUUGGAGUUAUCUUCCAGCCUGCUUGUCAGCAGAUAUAGGAGGAGGGUCAUGAUAGUUUAUAACAAAGUUAGCCAAAUAGGAGCAACAUUCUGAACAUAGGGCUCACCUGUAUUCAAUUGCACUCGUCUCAGCAUUGCAGCGGACAGCUAUGAAAUGGCCAUCGUCCAUCAGUUUUCCACCCAGUCCUCGAAGAGAAUAGUCAAGUAGCUCCUGUGAAUCAACAGCCUUCGAUGCAGCUCCCCGAAGUGCACGCCAUGAUACCCACUGUCCAGGCUGAACAACCCGUAGGACCUUGAGCAUUGCAGUUUCUGCCCGAUCAAUAUCUUCCUUUGUCCACUUGCAGAGCACAUUAGAUGCAACUUCUUUGUGUUCAUCAGUUGUGGGUUUUGAUGUCUCGUUCUUCUUGCGUGCUUGAUGAAGCAGGUGCAUUAUGAACCGGAAGAGGUCCCGAACAGUCACAAGCUGGCGAUCAGAGAGUGCCCAGUACAGAGCAAUCGUGUUCUGCAGAGGGGUCCGAAUGGGCUGGCGAUGUGAGAAGUACAACGCGAGUUGUAUACCGGAAAGCGUAUCCACUGCCUCUUGGUAAGUAUCUGAGGUUAGUGCAAAGCUACCAGCGCCAAACUUGUAUCCCCAUUCACCAUACCAAGGAUGGCCACUUGUGAUGGCAUGCAGAAGCCUGUAUUCCAUUCCAUGCUUCUUGGAUAUGUCCAUGACAGUUACUUUCCUGCAGUGAGGUUAGUGAAAUUUUCAGGGUUAUGGCAUGCUGAAUAACCCUCUUUUUGUAGGAACGACACAUGAACCAAAACAUAUCGAUCAAUUUAUACCUCACAUGUAGCACCUUGCACAAGCGAUCCCAGAAACUCAUUAUGUCACGGCCCGUGAGACAUCUUGAGCCACCUUCACGGCCAUUUACCCUCAGAAGGUGGCCAUAACCAUUUGCAUGCACCACAGCGUGCAGCAGGUGGGUGUUGUCGUCCAGAUGCAUGUACCCGCACUCCUCCAGCUCCUCGCCAUCCAUAUCAAAGUUGCAUAGGAGGCAUCUGGAAAACAUUGCAUCCAAAGUUAGCACGAACCACAAUUAGCAUAGGGCAGCAUCAUUCGAUCACCAAAUCUCUCACAAGUUUAAUCUUUGCAUCUAGGCACGAUAAGAACAACUCGACAACUACACCACGAUAUGAAAUAAACUAGGCACAUUAUCAUCCUUCCGCCCGAAACCAAUCGUGGUGUUACAGUUGACUAUAUUUAUCUUCUCUGAAACUAACGGUGCUUGUUCUUCCCACCUUGAUUCUCCAGCGACUGUGGGAGUCCCGCAGCGGAGGCAGCAGCUGUGGCGCUUGCCGCACACCUGGUUGUUGUCGUUCUCGAUGAUGAAAUGGUACCGCUUCCCACAGACCGGGUGACCACUCCAUCCUGCAACCAAACAAAUGGCAUCGCGCAAGAUUACAUCACUGCUUCUGUAGGAUUGAAUUUUUUUCUUCUCUUUUGCAAAAGGAUUGUGACAGCAAUCAAAUGUGGAAAUUGUACAUCAAAAGCAACAGGCCAACAAUACUUGCAUAGGCUAACAGUCACAGAAGGGGGCGAGAAGAUUCAAGAGAAAUUGCUGUUGGAAACAGACACGGCGUCA

Sequence
(XR_001548411.2):

CCGCGGCUUGCAUCCGAGUCGCCAAACCGCGGUUCGGUUCGCCGCGACCGCGCGACCCCCUUUCCUUCGCCCCCUUCUCCCCCUCUCUUCUCUCCUCUCUCUUCGCACCGCUCCUUCCCCCCUCCUCGAGCUGCUGGUAUCUCCACCGCGAGGAGAGGCGGAUGAGCGACGCCAUCCUCCCGGGUGCUUUCCGCCUCGCGGAGGGGGCGUGCCUCCCACGCCUCGCUCGAUCCGAUGAAGCUGCUGGGGGGCGCGCGAUGCGGAGCCCGUGGCGGUGGGGGGGAUUUUUUUUGGUUUGUUCAGCUGCCUGCUUCGAGCUCGCAACAUUGCGGCCAGGUGCUGGAAAGGUGAUGCCUCAUAUUCUCGUUACUUGUUAGGUGUAAGGCCAGCAGGCAGCAGCUCUGUUCAGGACACCACUUUCUACUAUAUGGCUGCCUUUCAUAGUGUAAAGCCACGACAUGGAAGCCUGGAAGAAUUUAAUGAGUGUUCGUUAGAUAUCUUAUUAUUCAUUUCAAGAUUGUCAUCUUUCAUCCCACCCUCUUUAUGCUGCACUUGAAUGGGUAAAGAAAAUUUGCAAGCCAGUUUUGACCAGUUAACUGCCUAACAAUCAUGUUAUGAAAAUUUUGCAGUAAGUCUUUAGCAAACUACCCUAACAAACAUGUGCUACUAAGCCUUCCUCAUUUUUGUAUUGCAGGUGCGUUCGGAAGCUCUACUCGUUUAGUAUAAUCUUCAAGUGAUAAUAGAUCAUUCCUAUCCCUUUUUUGCGAUGCUGCUUGUUCAUCUGCUUACUGUUAGCCAUUUCUGCAUUUGCAUAUAUCCUGAUAGCAAUAUUCUAGAGGAAAUGUAACGCCCAGAAGCCUAGUUUUGUCACUGACAUAUAUUCUCAUAUUGAUCCAUCAUUACGUACGUUUUGUUGACUUGUGUUAUAUUUCUAACUUAAAAGCUUGGCAAAAAUACUUGAUUGUGCAUGCAGAAUUGAGCGUGCUGAACAAUUCUGAGAAAGGAUUGCUUCCAAGGAGGAUAGAUUAACAUCAUAUCACUGGUCAGAAAGACAAGAUUCCAUGAAGGUUCACACAGGCCUCAGGUGCAUUAUGAACCGGAAGAGGUCCCGAACAGUCACAAGCUGGCGAUCAGAGAGUGCCCAGUACAGAGCAAUCGUGUUCUGCAGAGGGGUCCGAAUGGGCUGGCGAUGUGAGAAGUACAACGCGAGUUGUAUACCGGAAAGCGUAUCCACUGCCUCUUGGUAAGUAUCUGAGGUUAGUGCAAAGCUACCAGCGCCAAACUUGUAUCCCCAUUCACCAUACCAAGGAUGGCCACUUGUGAUGGCAUGCAGAAGCCUGUAUUCCAUUCCAUGCUUCUUGGAUAUGUCCAUGACAGUUACUUUCCUGCAGUGAGGUUAGUGAAAUUUUCAGGGUUAUGGCAUGCUGAAUAACCCUCUUUUUGUAGGAACGACACAUGAACCAAAACAUAUCGAUCAAUUUAUACCUCACAUGUAGCACCUUGCACAAGCGAUCCCAGAAACUCAUUAUGUCACGGCCCGUGAGACAUCUUGAGCCACCUUCACGGCCAUUUACCCUCAGAAGGUGGCCAUAACCAUUUGCAUGCACCACAGCGUGCAGCAGGUGGGUGUUGUCGUCCAGAUGCAUGUACCCGCACUCCUCCAGCUCCUCGCCAUCCAUAUCAAAGUUGCAUAGGAGGCAUCUGGAAAACAUUGCAUCCAAAGUUAGCACGAACCACAAUUAGCAUAGGGCAGCAUCAUUCGAUCACCAAAUCUCUCACAAGUUUAAUCUUUGCAUCUAGGCACGAUAAGAACAACUCGACAACUACACCACGAUAUGAAAUAAACUAGGCACAUUAUCAUCCUUCCGCCCGAAACCAAUCGUGGUGUUACAGUUGACUAUAUUUAUCUUCUCUGAAACUAACGGUGCUUGUUCUUCCCACCUUGAUUCUCCAGCGACUGUGGGAGUCCCGCAGCGGAGGCAGCAGCUGUGGCGCUUGCCGCACACCUGGUUGUUGUCGUUCUCGAUGAUGAAAUGGUACCGCUUCCCACAGACCGGGUGACCACUCCAUCCUGCAACCAAACAAAUGGCAUCGCGCAAGAUUACAUCACUGCUUCUGUAGGAUUGAAUUUUUUUCUUCUCUUUUGCAAAAGGAUUGUGACAGCAAUCAAAUGUGGAAAUUGUACAUCAAAAGCAACAGGCCAACAAUACUUGCAUAGGCUAACAGUCACAGAAGGGGGCGAGAAGAUUCAAGAGAAAUUGCUGUUGGAAACAGACACGGCGUCAUUUGCCCCUUUCACCCCGUUAUUUCC


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

0

LEP:

0.0%

ME_num:

4

MEP:

0.81%

HE_num:

487

HEP:

98.98%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

caryopsis

Tau :

0.60

Avg Expression:

69.11

Tip: OSA-LNC4325088 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-1.092189946803540.000515787514033972
2IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB)1.122322276036290.000698186204075077
3IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA)1.034553261568420.00149381973952818
4Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day-1.029101646847291.18828681508328e-05