Chr:
Chr1
Start:
18555670
End:
18560266
Strand:
+
Ref_name:
LOC4323980
Sequence
(XR_001545113.2):
CCUCUUCACCGCGACCGCGAUUUCAUCCUAUCCAUCUACCGCAAUGUUCGCCUGCGCUCUCGCCACCGCACGAAGACUCCGGCCUCCGCUCUAUUUGCUCCUCCUCGCUCCGCACAUCCUCCCUCCUCGCGUGUCCCCGCCGCCACCGCACUCCACCGCUGCCCCCACCGGAGCCUAGGUCUUCCGCCGCCGCCGCGCUCCACCGUUGCGCCCGCCGGAGCUGAGGUCGUCCCCAGCCGCUGCCGCUGCCAUGUGCAAUCAUCCCCGCAUUUCGAGGGAAAAUCCGCCGAUGAUACCGCGAGGUAGUGGUGGCCGAUGGGUAUGGGUGCCGCCGGCGCUGCCCGCAACCGAUGCGUCACCCUCCUCACUAUUGUCGUGCCACACAGAUCGAGGACUAAAGCACCACCAUGGCCGCCACCGCGCGCUCGAUCGAUCAUGCCAGCAACCCAAAAACUGACGCUGUCGCUCGCCACACCACCGACGCCGUCGCCUGCCGUUUGCUCCGCGGCUCUUCCCAUUCCUUGGAGGUCGCACGCCUAUGGCACCAUCGGUCACCGCCGCACAUACUCUUUGCCGCCCCUUCCUCUCCCUCCAUCACCCGCAGCGAGAAAACCUCCAUCCGCAGCAUGUACCGCUGUUUGCAGGUCUUCAACGGUACCAAUGAUUAUCCUACCCGACGCCCAGUAGACUACCCACUGGAAGAGCAGCAAACUGAUGAACAUCGUCUAGAAGACCAGGGAGAUAUACAUGUCCAUAAGCAUUGGACAAAAUGGAGACAAGAUUCAAAGGAAUCACGAGAGCAGGCAAUGAAGGAAUGAGGAAUCUAACUCUAAGAAAUAGACAGUUUCAACAUCUGUAAUUGGUAACCCCUUCCGAGUGUUUUUUAAAUUAAAAUAUGUAUGCCCAGCAGUAAUAUGCUGAAAUGAUAUUUGGGUGGUGCAGGAAAUGAAACUGUGCAAUCCAUAAUGUGUCUUGUAUUCAACAAUGCACAUCCAGCAUUAGUACCAUGCCUCUACAAAACAUAUAAUUUGAUCUGAUCGGAAAACUCAAAUAUAUUUAAAAAACCGAUAUAAUGUUUCAGCUCUUAAGAAUGGUGUUACUAAAAAUGCAACUAUGUCAAAUGUGUUUGCUCCAUCAGUAAUUCUGUAUAUAAUUGUUGUUCCUAAGUUUUACUGACUUAGGAGGCCGCUGGGAUUUUCUCCUCUGUGAAUGGCUAACCUCUGUAUAUAGCUAUGUAACUGUGUAAUGUUACUGCUAGAGGGGCUUUCUACUUGGUGUCCUAUUUGUCAGCAUAAUGUUGCUGACGUUGUAAUAUUUCCCCUUCUUGCUUAAUCAUGGUGGUAGACUCACGGAUUUAUUCUUCUGUUCCCUUUCUUCAUGCACCGCUCACUAAUUUUGCCUUGAAGCUUUGAUGUGCUAGGAGUCGCUAUAUUUUCUUUGUACACUCUAAAUCAGGUAAACCUAACCUUUUUCUCACUGUCAAAAUAUGAUUUUCAGGUAAACCUAACCUUUACCUUAAUACAAGUGUUCUUUGUUUUUAUUUUGAGGGAUUAAGUGAAUCUUGGUGAAAAAAAAAUGAAGGAUCUGGAUUUUUUUUGAAGGGUCAUUUGAUGAUCUAUGUUGUUCCACGGGUGAUUUUACUUCAUGCUUGAUUGUUAACUAUCCCUGCCAUAUCUAAUUAUCUAUGUCUAUGUAGAUGUGAUCUCAUUUUUUUUAUGCAUGAGCAUUAACGAGGUUUACUCUCUAUGUAGAUUAAGAAGUAUUAUUGUCUGAAAAUAUUUGGUAGUUGCCUGAAAUGUUUAGCUUGGUUAUGUUAAUAGGAUGUACAUAUGUACUUCUGUUAUCUGGAAAUUGCUUAUUGCGAUUAUGUCAUGCCGUGCACCAUGCCAAAGAUGUUCCUUUUUUUGCUGCAUAAGCUUAUGUCCUAAUUUAGGUUCUGAAAUUGUAGCUAGAAGUUUGAAGAAAUAGUAUUUUGUACAAAUAUAGCUGAUGAGCAAGUUAAAAGGCUACAGAACACUGUUAAUAUAUCAACUGAAGCAACAUGCUGUGCUAAUGGGCUUACUCAUUUUAUGUAGAUAGGCUAUUCUCUUAAGCAGGUUUGACUAUUUGGCUUUGCUCUUUUUUAUAUGCUUUCUUCCUUUAAUAGUUUAAUAUACCUCCUAUGUCCUAACAAUUCAGUUUCAGCUGUAAGUUAGUCCCCUUAGGCGUAUGUUCAGCAACAGUAUUUGUACAUAAUCGUUUGUUGAUAACAAUAAUUCUUGAAGUGUUGAUUUAUGAUUUCCUUGAAGUGUAAAGCAAGUCAGUAACACACGAAGAAAAUGUGUAUAACAAUUUAAUAUUGAUAACACUACAUUAUGUUUGACUAUGAGCGUAGUAGGCUGCAGAAGGAUUUUAUUUUGACAAUGUUGAACUCAAUAGUCGUUGGUUCUAGGUACAUUAAAGACUGAUGGAGGAAUAUUGAUGCAGUGCAAAUUUGAUCAAAAGUUGCCAUAUGUUUAUCUGGCAAAAAUGAUUUGCUGUCAAAGACAGGUGAUGUAAAGGCUAUUAGCUUCCUAAACAUAAGGGGGAAUUAUGCCUUUUCAUGUGCCCUGAGUGCUUGAUUAUUUACCAUGCAAAUCAUUGGGUGAAUAGCUAAUAUGGUCCCUGAAGUUUCGCUUUAAGCUCAGUUUAGUCCUUGAGGUUUCAAAUCGUCCAAACAAGUCCUCCAAAUUUAUCAUUUGGGUUAAUAUAGUUCUUGAACCCAUAAAGAAUACCACGUGAGCAUGCCAAGUCAUCGUCGCAUGCUGUAGUAUAAAUAAAAUGACAAUUUUACCCUUAUAUACCAUAUAGAAAAGAAAGAAAAGAUGCAAACAAAAAAAUAAUAGGCCAACCCAGGCCCAACAUUGUUGCGGAGGGUGGCCGACAAGAAUUUAUACGAUCAGUGCUUGGCUACAGCAAUCAUAAGUGACAAUUCUAAAACGAUCAUACAUGUGUGAAACAUUUGUUUUCUUUUAUAUAUGGUAUAUAAAGGUAGAAUGGUCAUUUCAUUCAUAUCGGUGCAUACGAGGAUGACUUGGCAUGCUCACAUGGCACUUUUUGUGGGUCCAAGGACUAUAUUAACCCAAAUAAUUAAUUUAGAGGAUUUGUUUGGACGAUUUGAAACCUCAAGGACUAAACUGAGCCCGAAGCGAAAUUUCAGGGACCAUAUUAGCUAUUCACCCCAAAUCAUUAGUCGACCAUGGGAUAUUUGUUUCGUUAUAAAUCCAUUGAAGUUCAUAUUUUGGCAAUUAACCAUAUUUUGACUAAACAGACAAUUGACAAGAAGAUCGGUGAGUUUUCUAACUGCCAUAUUGUUUAUUCUGGAAUCGAUUUCCAGAAGGUUAGUUUUCCCUUAUCAUUUUCUAAUCUGUUGCAUUUAAGUAAUAUCACUAUAAUAUUUGCAAUAGAUGAAUCUGCUGGUGGGUAAAAAAUGCUCUUAUCUUUGGUAGAAGGAGCAUUUUAGUUGAUAUCAUUGUGAAAUAUGCCUUGUGUAUGUCACAUGUUAUAAACAUGUAUACCUCUAUCAUGUGCCAAGAAUGCAUUACAAAAAUAUUGAUGUUUACUUGCAACUCUUUUUAAUGGAAUAACUACUUAUCAGGUCAGUAAAUUUUGAGGCAUACCUUUGUUCUAAUUAAUGAGGAAUACAUCCAAUGUGCAUAAUGUUAAGUAACGACGUCAUGUAGGGAAAUAUGGGUAUUUUAGUUUACUAAAAUCUGAAAAAGCAUACCUUUAAUUUGUGGUGCUUUAUGCAGAGACAAAUUAAGGUGCUAUAACCUCUUGCUCUGCAUCUUACUCCACCGCCAGGUCUGCUACCCUAUUGUUCCAGGGACAUAUUUGCUUGACACUUAACAGUAUAUAUAGAUGCAUGUUAAAUUAUUUUACCUUCAACAUAGAUUGGACAUGUGCACGCUACUCAUAUGUUUGUAUUAGAUGAUUUGCCAGGCCGAAACGUAUAAUACUAGCUGACCAUGUGUUUAUUAAAAUGCUUCAGAUAUAUCAUUAAUUUAUUUUCCAUCAUUUAGCUUCUUCUUUCAGUAAAUGUGAUCAUACCAAGAGAUAUCGAGAUCGUUUAAGCUGAAAAUCCCUUAUUAAAAAAUGAUCAUUGGUUUCAUCAUAUUUAUUUUAUUUCAAUGAUAUGUUUGCUUAUGUUUCAUUCAUGGAUUGGAAUUUGAUUUUCAAAACUAAUUGUUUUCAAGCUGAAGCCUUUAAUCAAUCAAGACGAUCUGGAUGAAUGAUCCCGCUUCAGUUUGGAGAUAUAUGAAAUAAUUGCAGAUUUAUAAUUAUACAUUCUUAUUACUUCUAAAACUUAGUAUUCUUUGUAAAUGGAGAUGACAACAAUGUUGUAUUUUUCUGAAUUCUUUGUUAUGGUUCUACUUGGUGAAUUUCUAUAUUUUCUUUAAUUUUCAUUUUGUAUGGAAAUAAAAAUGAGGCGUCUUCUCCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
34.96%
ME_num:
MEP:
57.32%
HE_num:
HEP:
7.52%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.80
Avg Expression:
5.81
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.07496106140601 | 0.004246634926795 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.61116331071093 | 3.73660715033727e-07 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.24565021133736 | 0.000703158739362367 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.14801012755164 | 0.00544337859887604 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.49111318963796 | 8.74209186501782e-05 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.38603102631629 | 6.66107268403295e-06 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.02783733813143 | 0.00333150502546615 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.00590482899185 | 0.00416970427425832 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.14299022123845 | 0.00696831351900232 |
| 10 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.1503895171332 | 0.00945040857491072 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.08964190501228 | 0.000681430224887685 |
| 12 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.1504642371602 | 0.00963074895195793 |
| 13 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.15059788541788 | 0.00947927421191831 |
| 14 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.44781233333921 | 1.37183544562866e-18 |
| 15 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.05468742383365 | 0.000136847580299974 |