Chr:
Chr8
Start:
349267
End:
351517
Strand:
+
Ref_name:
LOC112939913
Sequence
(XR_003243867.1):
UCUUGUUUUUCUUUUCUUUAUUUGAUAGAAAAUUAAAUGUUAAAAUGGACAUUUAAAUAUUAUUUUACAUGCACGAAUGACGUGGCAUGUACACGUGGCGUUUUAAGUGGGUCUAAGAACUAUAUUAAGCCGCAUGAUAAUCUUUAGGGUCUUUGUUUGGACAUUAUAAAACAUCAAGGACUAAUUCAACCCCUGAGCAAAAGUUGAAGGACUGAAUUGGCUAUUCACCCAAAAAAAACUACAUUAAAAAUAUCUCAAAAUCAAUCUUAAAAUUAAGUUUGAAAAUUUAAAAUUAGGCUUUUUCUUUGGCUUAUUAGGCCAUCCGAUGGGAGCCCGCGAGUUGCCGAGAUCACAAAUCCCCAAUCACGCCGCAAUAUCCAGAUCCUGUCGACAUUGGCGGUGCUAGGUCAGGUGUUGCUGAUGGCGUCUUUGCUCCUCCUACGUCCUGCGGCUUCAGGCGGUGCAAAUCGGAUCCGAUUCCCCUCGAUCAUCUCCUCCUUCAGGAGGGGCCUAUCCUCCCACAUCGACGCCCAUGGUAAGGUGAUGUUUGUGGCAGAAGAGAAGGACCUUUGCUUCAGAUGAUUCCCUGUGGGCCUUGUAUGAGCAGUGGUGCAAGGCUUCUCUUCAACCAGAAGCGUGACCAUGCUGGCUGAGAUGGUUGAGCGCUUCGAAAUCUUCAAGAGAUCGACGUGUGCUCCUUGUGGACAGAUCGAGCUAACAAGGAAGCUAUCAGAGAUGGUCUGUCCCGCAGACGACUUGGAAUAAACAAGUUCACCGAUGGGAAGAUUUCAGAGCUCCAGGCCAAUAAAAUGCAUCAGGGCAUGGGCCGGUGUUCGGUGAUUCAAAGAGUCCUGUUUUGAAUCUAUCUCAAACUCCCCAGAAUCAAAUCAUCUUUAAUUUUGUGCACAUGGUGUUAUGCUUAAUGUUUAAGGUAGUGCUUCGGAACCAAAGUUGUGCUCUUGAAUUUGUAUUAUUAGCAUUUUAGCAAGCUAUAUAUAGCAGGCCGUGCAUACUUAACUUGUACCAAGCGAUAUAUGCCCUCUUCCGCAAAUAAAUGCUUUGCUCCUGCACGUCAUGCAUACUACUUAUGUCCCAAAAUAUAGCAAGUUCUGGCUAUGACAUGUAAUUUAAGGAACUAAUAACAUGGGAUAAAAUUAAUAAGCACCAGAUUAUAUGGCCAGGCCAACCAGUAAGACUCAUGACAGGAAUUAUUCAAUUCACUCCAAAACGCACAAGAAUUUGGGGGGUAAAUAGCUCUUUUGAUUGCACUACUACUACUACACGAUCAAAUAAUUCCGUAUUGCCCCUCAACUCCCAGAUGGAGUAGCCUCUUACCAUUUAGUAAUGUGCAGUUAGAAGGGUAAGUGCUCCAUGGCAAACCAAUUAUUUUGACACGUGCUUACUCCUGAUAAUUGUCGAACUCAAGUUUAUUGAGCUAAUAAAGCUUAGCGUCUUUCCAGUUACAUAGAACUACUUGCAUCCGGCAAAUAAUCUAAUGCCAAAUCUUCCAUGGAAGGCCACCUAAUGCAUGGAGCAUGCUCAUUUUAGAAGCAGAGAAGUGCCAUAUGUACGUAUCGUACGUAGUGUACCAUUGGCAGGACUUCAGAGCUUCUGAAAACUGGAGUAAAUUGAUGAGAAAAAAACACUAUCACAAUAAGAAAUGCAUUAAGGAUGUUCCCAGCACCAGUUAAAGACGGCUAUUUUCCAGUUAGUGCAAUUCAUGAGAUGAAGCAUUCAACUCAAUCAUACAAGAGUAUGGGCAAAGGCAGCUUAAACUUUGUUAUUGCACAAUUAAUAUUAGUACAUUGAUUGCAGAAAUCUUCAAAUGAUAGUAUACUAAUACAGGAGUGCACUGAAUUAUCCACAGAAUAGAAGAUAAUGAUCAGUAUCAUUCACACCCCACAGCUCCAAAGCUUAGCAUAAAUGCAUGAUCAUGUUUGCACCGCUAAGAAACCGUUGAAUCAGCAUAGCUAGCCUUUGUUGUUCUAAUUUGCACUAGUAUACUUUGUGGUUGCUUUUGGGGAUUGAAUUCGAUCAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
78.66%
ME_num:
MEP:
20.93%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.93
Avg Expression:
3.89
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.7123359726226 | 1.15167248860613e-11 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.52863185583965 | 7.01593040169998e-10 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.94392199364598 | 1.53016225600182e-08 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.14864304403669 | 0.00546378269547147 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.10121708942596 | 1.39744143720418e-07 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.31978515086108 | 9.05055796278625e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.01034158473626 | 1.22376381384423e-15 |
| 8 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.84738364913272 | 0.0155116645947249 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.86839912629404 | 6.37589640472246e-08 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.59042270448557 | 7.75056339795539e-07 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.58174595512152 | 8.00573442323982e-14 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.70824065944988 | 1.75745478930031e-10 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.1452262941142 | 1.3974146900775e-17 |