Chr:
Chr8
Start:
2567810
End:
2570258
Strand:
-
Ref_name:
LOC112939877
Sequence
(XR_003243797.1):
AUUCACGAACUCAUCCACACAAUCAUCCACCAACGCAUCCAGUAUCCACAAGCCAUCUAUCAUCAACGCAUCGGCCCAUCGAUCAACACACAACGCAACCAUCCAUCCUCGACGCAGCCAUCCCUCGUCAUUAACACAUCCAUCAUCCAGCACCGAAGCGACAGCACACGCGCGGCCGGAGCACACCGGCGGUGGCGAGCAGCUUCGGACGAACCGGCGUCCGGCAGGGGAGCACGAGGAGGGAGAUGGAAUCGAUGGUCUUCCAAGGCAAGUGUGCCAAACCAAACAAGCAAAAUCUCAGGUUGCCUGACCAGGCAAAGCACAUGCACUUCUCCGAUGUUUCUCAGGCACCUAAAUUUCUCAGGCACAGCUCCCAGGGCACCAACCAAACAGGCCCUAGAUCGGUGACCGGCGGCCGGCGGCAUCCGUGCAGGCGACGGCGGCUAUGGACGACCGGCAGCCGGCGGCACUUCGUGUGGGUGACGACGGCUUUCGAUCUACGUCAACAAAUAUCGGCGACCGGCGGCCGGCGGUCUCCCAUCGCAUGAUCGGAUCGGCGAUUGGCGACUGGCGCGUGGCGGCAGCACCCGAAGGACGACAGGACGACCGUCGGCCUCACAUACACACACGUCGCACGGCGGCGUGGCGGCAGCGACGGGGAGAUAGCAAGUUAGCAAAUGCAAGCAUGCUAAUUAAGCUAAUUAUGGUGGCAACAUGGCCGACCAAUCAGAAGACGACACAUCAUCAAAAUGCUAUAGUACCAUGCAACAAGUCCUGUUCAUUCUUGUCCUUCUCAACGGGGUGUUAGCUGUGAUUAAAUCCAGCUAUUAUAUGCGCUGAUCAUCUCCAACAGUUCCUGAUUCUCCUCUAAUCUAAUCUCGACGCAACUGCUGUGACGUCAAGUCGUUCGAGCUACGCAACUCCAUGCAUGUCUUCACCAACAAUCUACAUCGACACGUUGUUCAAGACCGACGAGGCUAGACGACGGAGGGUGGGCGAAGCUGAUGCGAAGGCCACGCUACCAACACCGGCGCACGGACCGACGAGGCCGUGGAUCGCUGCCGGAGCUCACGUCUACACAUCUACAUCAUCAUCACAACCAUGCAUGGAGAACGCGAAGCGAAGACGACGAGACGACCACAAGCAGCUUAAUUGGAGGUUCUCUUGCAUGCCUAAACUUGCGGAGGUAAUUAACUGGGAGCUUCUCGAGGCCUCAGGAACCAGGAGACCACAUCGCACAAGUCAGAUCUGUCCAAUGACAGAUUAUGGAGCGCGCAUACAUAUAUAUUGCAUUGGGAAUUUGUAUUUAUGAUCUUUUAAGAUUAAUAAAGAGCAUGUUCCCUAUGUUUUGUUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
64.63%
ME_num:
MEP:
19.11%
HE_num:
HEP:
16.06%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.93
Avg Expression:
13.75
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -2.33043537631867 | 3.98870634756421e-09 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.1956560003897 | 7.94463212024029e-05 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.37304929194026 | 0.00738698492928994 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | 2.20696204788435 | 0.00268935590898139 |
| 5 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 2.13083022729398 | 0.0202353552331639 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -5.83960685617976 | 1.93146729808147e-13 |
| 7 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -2.37983242817518 | 9.70943653192827e-07 |
| 8 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.52054509371535 | 4.60189592163533e-09 |
| 9 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -2.17239442974791 | 0.000150096915054525 |
| 10 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.69822336356175 | 7.76393213314456e-05 |