RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC112939876

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr8

Start:

24885496

End:

24887471

Strand:

-

Ref_name:

LOC112939876

Sequence
(XR_003243796.1):

GUGCGGUGGCCGGAAUCGUGCAUCGCCGCCUCCGAUGGGGCUCAGAUCACCGGCGAGCCGCCACUGCAAGCUACCUUGACCAACCCAGCUUUGGCGGAGAUCAGUUGCGGCGCAGGUGUAUGCCAUGACUAGCGAGAGCAAAGGAUUUGAGAAGUGAUCAAGCUCGAUCAGAUUAAAGGGGAUCAGCUCACUUCUGAUAUUUCAGAUGUUCCCUUCUGAUACAUUAGCGUAUUUCAGGAUCACAGGUACGUAAUCGUCAGCACAAAGUAACUACCUGACUAUCUAACUUUCUUUUUUCUUCAGGAUGAAGUCUGAAUUUUUGGGAUACGAUUACCUAACAAGUUACACAUGCUUGUAGUUUGCAGUAACAGGAAUACAGGAUGGUCUGACAACUAAUAUGUUGAAUUAAUUAUUGUCCUAUGGCUUCUCCAGAAGCAAUUAGGUUAAUUGUUUGUUUUUUAAUCUUCUGUGUCACAGUCUUCUGAAUGAUUUUCAGAGUAAGAUAUCAGGAUCUAAGGGUCAGAGUGUUUCUUUGGAACUCUAGAUGCAUUUUACAUCAUAGUAUUGUUAUUUCAAUCUCAGGAUUGAGUGCAAGCAAUCUGUUUGUACAAAAUACAGUCAUCUGAACUCUAGAAAGUUAGUUAAAUAUUAUGCUAACUCACGUUAUGCAAGUGAACUGUUCCAUUAGAAUGUACUCAGGUAUGGUACUGUAACAAUGAUGCUGAUGUUCAUACAGUUAAUAUAGGAUUGCGAUUUUUCUCAUUCAACAAUUCAUAGCCAUAACUAAAUCAUUUACUUGUUUUUGCAACUUAUUCAAAUUUUGAUGUUUGAUUGUUUUCUAGUGUACUACACUUCCCUAGAACGUGUGUCACUCGCACUCUCUGAGAUGGACAGCUACAUAUGAACAAACUACUAAUAAUUGAGAGUACUUAUCACUAGUAACUUUUUGAGAUGUACUCCAUCUUAUAAGCAAUCAACCAGUAGUUUGACAAUAUCAGGCUUUCAGCUUUCUUGUACCACAUAUUCUGUUCAAUUUAAUAUAUAUGCCGACACUCUUUUAACUUUACAUAUUUUGUGAAGAACAAUAAGCUAUAGCACCUCUAGAGGAUAAGACCUGCAUAUUGUACGCUCAUCUGAAGGAUAUGGAUUGUUUGAAUACGUUUCAUUUUGAUCAUUCUUCUAUUGUCUGCUUGUCUUCCUUGCUUCUGUCUUGACAAGAAAUCUGAUCUCCCGGGGCACGUCUCAGAUACAGUAAUACAGAACGGCUGAGAAAUCCCUAUGGUUACUCUUAUACAAACCAUGCCAUCUGACCCCUCAACAAUAGUUCAGGCAUGAGAUACAGAAACAGAAACUACUGUACAUUCUCAAAAACUUCAUAUUUAUGUUCCUAUGACUUGAUGUCCAUGCCAAAAAUCGUUGAUCCUGAACGAUCAAAUUAACAAAAAAAAGCAUUAGAUUAAGUCAGAAAACAACAGUAAGUUACUAACUACUGACUAAUCCUUAAUGUUGAUCUGUGCAGGAAUGUUACCUAAUGUUGGCAGUAAGACUGUCAGAGCUGCAAUGGCAACAAUUUUCAGGGGCAACCCAGUGGCCACCAGAUCCUUGAUGGUAAUGUAGCCGGUGCUGAAGCCGACAACGUUUGACGGCGAUCCGGUGGGCAACAAGUAUGACAACUGGGCCCCGAUUGCGCCGGAAACCAUGAGCAAGGCAGGGUGCACCUCAAUGGAUUUGGCAAGUUCAGCGAACAAUGGCAGCACCAGCGUCGUGGUUGAGUCGUCAGAAGU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

84

LEP:

17.07%

ME_num:

357

MEP:

72.56%

HE_num:

50

HEP:

10.16%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

seedling

Tau :

0.80

Avg Expression:

7.74

Tip: OSA-LNC112939876 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1.851997831998370.0375064049772562
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA2.001769026637140.0268887409276809