Chr:
Chr8
Start:
6801918
End:
6802776
Strand:
-
Ref_name:
LOC112939873
Sequence
(XR_003243791.1):
UUCCAGAUCAGAUCUCAAAAUUCUCCUCUGAACUUUUCCCCUCUCGUGAGACUCCUCGUCUCCUGCUCGGCUGCUCCCACCAGAUCCACGCUGCUGCAGUCUGAACUGGUGAGAAGCAGGCAAGAGGAAGCACUCAUCUUCUUCUCUCCUCAUCCUUUUUCCUUUCUCUGCUGCAGUCUGCAGUUCGGCUAUCUUCCUGGGCGUGCUCUGUGGCUCAAGGUGAAAAAUGGCGAUGCAGAGAGUAGCGGCUGAGGCAGUGGAGGGCAUAUCAGUACAUGACAUCGCCACAUCCACGAGUGGUGGCGAGACGGAGGGCGGCCGUGGCCUUCCUCGUCGGCUUGCAGCGCGGAGCCGUGGAGGCAGCGGGCAAACUCGACGGCUGUGGCAACACAACAGGAGUGUACUGCACACAUUCAAGACUUGUACUAUACAAUGCAAGUGUAUACGCAUGCAGUAGAUGACCAAGUUCAACUUAGAGCAAAAAUGAUGAUUAUUCAGAUGUUUAUCUCAUCAAUGGAUCUACGGCAAAUAAUUUUACAAAGAAUAGAGAAAUAGAUGCACAUUUUAAUAUUGUAUGUAGAAACGGUACUUACUAUUAAGACUUGUUAUAUGGCUUGAUGUAAAUAACACUUAUUUUGUUUCAUGCGUGCUGAUCUGUGUUAUUUGAGACAAGUGAUUGUUAUAAAUAUAUGUUUUUCUAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
45.12%
ME_num:
MEP:
41.67%
HE_num:
HEP:
13.01%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.91
Avg Expression:
16.44
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Taichung 65 // shoot_apical_meristem // 0_days_after_shift--/--Taichung 65 // shoot_apical_meristem // 12_days_after_shift | -1.8743369831259 | 0.024209615647526 |
| 2 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -3.1933042882984 | 0.0161650226798341 |