Chr:
Chr1
Start:
25933185
End:
25934898
Strand:
-
Ref_name:
LOC112939862
Sequence
(XR_003243751.1):
UCCUCUCUCUCUCUCAAUCUUGUCUCUGCAGGCCGCCGGCGGGUGGGGAGGAGGCCGGCGGGGAGCUCCUCCUGCGUGAUCGCGAGCUCCGCGGUCGGACACGUCGCCGAGGUCGCCGCGUACCGCCUCAUCUUCUCAACUCGCACCACUCGUUCUACGACGGGCUCUACGUCGGCGGCGUCGCCGACGCCCGCAUCCGCCCGGCGCUCCGCACGUUGAAGCAGAACAUGUCGCUGCUCCUCUCCGUGCUCAUCGACCGCGUGCAGCCGGUGGCGGUGCAGGAGGCGAGCGAAGCAGCCAGGCGGAGUGGGGGGCGCCGUCGCCGAUCAGCAGCCGCUCGUCGCCGGAGUAGGCGACGGCAAAGGAGCAGCUCAACGGGAGCUACUGGAGCACAACGGGCUGCUGGGUGGCGAGGAGGGCGACCGGAGCGGGUCGCGGGCAGGCAACCGGUGGCCACGGCAGGAGACGCUGGCGCUGCUCAAGAUCCGGUCGGAGAUGGACGUCGCCUUUCGGGAAGCCGUCCUCAAGGGCCCCCUCUAGGAGGAAGUCUCCAGGAAGCUCGCGGAGAUGGGGGUACAAGAGGAGCACCAAGGACGGCCGCGCCGGCCACGGCGACGGCAAGACCUAGCGCUUCUUCACCGAGCUCGAGGCCCUCCACGGCGCCGCCGCCUCCGCGCGCCCCCCGCCGCCGGUGUCCCUCGCGCCGGCGCCUGUGGCCAUGGCGCCCGUUGGCCACCCCUGCGGGUCUCUCGGCGUUGCGCAUCCGCCACUCCGCCUCGCCGUCGCCGGUCGCCCCACUCCGCCCAUCGCCGCCCCGCUCCAUCCCGCCGGCUUCGUGACGCGGAUAAUACAGAGAAGAGAGGGGGUGAGAGAGGAGGGGAAAGAGGAAGAAAGGUGGAUAGGAGAGGAGAAGAAGAGGCUGACGUGUGGGUCCCACGCUGAGUUAGCUGUCAUGUCGGAGAAAACCGGGUCGGAGAAAACCAGAGUCAAAACCGCUAGGGGACCUAGUGUGACAUCCCGGCCCAGGGCUUAAUAGUAUUAAUAAAAUACUCAUGUCAACAAGUUGCAACUUCUUUUCUGGAAGCCGAUUUCAAAAGAACUCUAGGGUUAAGCGUGCUUGGCCUGGAGCAAUUUGGGAUGAGUGACCGACCGAGGAAUUCUUUCCGGGUGUACACGAGUGAGGACAAAGUGUGCAGAAAAGGCAUGUGUUGGCCUGUGAGGGCAGUCUAUUACCUAUAAAAGCUACCAGAUGUAAGCGGGCCUGACUUGGGAGAGGCAAGACGUUACAUAGCGCAUGGCUGGUGUGGACCGGGAGUGGUGCACUGGACACGUUGCAACUUCUUUUCCGGAAGCCGAUUUUCAAAGAACUCCAGGGUUAAGCGUGCUUGGCCUGGAGCAAUAUAAGCGGGCCCUGCCUCAAUGUGCACUGGUUUUGUAAGUUGGGGGAUGCGUUGUAUCUGGUUUUGUGGUUGAAGGAUGAUUUGUAACCCGAUGACAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.02%
ME_num:
MEP:
46.95%
HE_num:
HEP:
51.83%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.83
Avg Expression:
49.36
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.05562959687963 | 0.00580955473875192 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.33219373570511 | 0.000175452827852117 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.17273828456965 | 0.000273384291227036 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.13751645515211 | 0.000445851566468467 |
| 5 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.31725690826493 | 3.20758419750904e-84 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.13899557800807 | 0.000858448270124517 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.20120597519233 | 6.16558036084139e-10 |