Chr:
Chr8
Start:
27120356
End:
27122732
Strand:
-
Ref_name:
LOC112939859
Sequence
(XR_003243748.1):
AGUGCUAGAAAGUCUUACAAUUUAAAACGGAGGAAGUAAUAAUUUUAUCAGGCUCUGAAGUUUAGUUCAUCCCAGAUUACUGUAAUAUAGCAAUUGUUAAGUGGUAUAUUGACUGGAAAUGAAUUCCAGGUUGUGUAAUCUACACCCGUUUACCUAGUUUGUAGGUAGGAUUUCUGUAUGCUCACCAGGACUAGUUAUGUUUUCCCAAUAUCCCUGUCAUGGAACAUUUAUUUUCUUCAUGCUACUGCUUGCGUGGUUUCCUUGAUGUGCAUGUAAAUUUCAAAUGUGAUAUGAUGCUAGAAUGGAGCCGAUUAAUUUGUUAUCUACUGUCAUCCUGUGUCUAAACUCUAAACUAAACAAUUAUUAUGAUUCCGUAGCCAAAGCAGAUUCGUGAGGUCAAGGACUUCUUUCUCACUGUGAGAAGAAGGAUGCUCGUUCAGUGAACAUCAAGAGGAGCAAAGAUGUUUUCAAGUUCAAGGUCGGCUGCUCCAAGUACAUGUACACCCUCUGCACCUUCGAGCUGAGAAGGCAAACAGGUUGAAGCAAUUUAUCCCACCAGGUUUGUAAAAAGUGGCUCUAGUUCUGUUUAGCACUAUCUCAUUUCUGUUUGGGUAUCUGAGUAGUUUGUGCUGGUAUAAAUCUUGCUUACAAUUUUGUUCUUCUUAUUGAUGGGCAUUCUUUCUCUGCAACAUGAUGCUUUGUUCCAAUAUGUUUGUUGUUUAUAAUGCUGGUAUUGCUUAUAUCUGUUGGUUGAUGUCCCAGUGACGAUAAAAUUUUGCUCCAAAGAUGAUUAUUCUCUGGUUUUAGCUUCAAGCCCUCUGUCAUACCAUUUUGACACGGAUGGCUUGUGGCUAAAACCAUUAUCAAGAAUCAUCAAUGAUGGCCAAUAAUAGCUAUGAGAUCUGAGGGACAACCCUACAGUACAACAUAUUCUGGUAUCUCAAUUCUUUGUUAUCCUUGGUUCCUAUUGAACUGGAUGUGUUAUUGGAGAUGUCAACACAUUCUGGUAUCUCAGUUCUUUGUUAUCCUUGGUUUCUCUUGAACUGGAUGUGUUAUUGGAGCUGUCCCCAAGGAAGAUAAAAACUUUGUACCAAAUAUGGAUUUGCAAUUAGUUUUAGCUUCAAGCCAUCCUUCCUAAUUCAUAUGAUGUGUGUGGCUUUUGGUUAAAACUAGGUUACGCUUUUAAGUUCAUCAGUGAUUGGCAAUAGCUAUGAGAUCCGAGGGAUAUGGGUUAUGGUUUUUUCAGACAAAAAAAAAACUAUUAGCAGAUCAAGAAACUAUUUGAGCUGUCAAUUCUGUUUUUUUUUUAAAAAUAGAGAUGUUUUUAAUGAUGUAGAGAUUUUCUUUAUAUAAAUUUCUGCAUCUGAUAAUUUUGUUUUCAUUGAUCCAUGUCUGAGCGUCCAAGAGGUAUAAAGAUACAAAGGCAACAUCUUAAUGAAGUAUCCAAGGUCUUUGGUGCUGAGAAUGCAAACAAGUUGAAGCAAUUUCUCCCACCAGGUUCACAGAAAGUGUCUGGUUUGAGCAUCCAGGAGGUCUGAAGACACAAAGGCAACAUCUUUAGUGUCCAAGUUUCUGUCUGUUAGCAGUUCAUGCAAUGUGUUGAAUCUUUUGGACUCCUAAGCAAAUUAGACCUGCCUGUUCUUGAUCUGUAAUCUCCGCUUUGGAGAAAAGGUGUCUUUUGCCACAGUUCUGUGAUGCAGAUUUUCAGCUUAUUUUAACCCAGCAGAUUUUCAGCUUAUUUUAGAAAUAAACUGCUUUCUGGAUAAGAUUUCUCUCUUACAGUUUACAUUGCACUGAAUGAAGCUUUUUUUUUUGUCAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
57.32%
ME_num:
MEP:
36.99%
HE_num:
HEP:
5.49%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.87
Avg Expression:
5.16
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.55679075538449 | 4.15025679077665e-10 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.91054292831901 | 7.13474405763615e-08 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.02328015265807 | 3.45358549366819e-11 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.71557718388427 | 7.38246675373905e-09 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.68977556294127 | 5.14995394330798e-09 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.0677607446798 | 8.80458620587169e-05 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.70070948437876 | 0.0330906078911509 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 2.23482148377794 | 0.0134908707296917 |
| 9 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -3.14559580535583 | 0.0030803025762211 |