Chr:
Chr7
Start:
14178956
End:
14182614
Strand:
-
Ref_name:
LOC112939728
Sequence
(XR_003243588.1):
AGGAGCGCGCAGGCCUGCUCCACGUGGCGGCGGUGGAGGGCGUUGGAUCCGGCGGGCGGCGGCAGUCCCUACACGGAUCCAACGGUGGUGGCCGUCAAUGCAAGAAUCCAGCGGUGGCGGCCGUCCCCGCACGGAUCCGGCAGCCGGCCGCCAUCUCCCCACGCGGGAUCCAGCUCCCCUCCUCUCCCCUUCCUUCCCUCCCUAGAUCCGGCAGAGGGGAGGGGCGUCGGCGGCAUUGCGGCGGGAGGGAAGCGCGGAUCUGCCGGCGGGUGGCGCGGAGGCCGGCGGGAGGCAGGCGGCACUAUGGCCGUCGGGCGGAAGCCCACUGCCGGAUUCUUGGGUUUCGUUUUUUUAAAAAAAAUUAUGUUAUUUCGGAUUUUUGUUUUCCCGUGGGGAUGCGCCACCCGCACGCAAAAAUCAUCAUUUUCCCAGACCCCUAGGUGCGUGUGGGCCGCCUACCCGCGCCCAAAAAUCAUUUUAGCCCUCACACAAAAAUCUUGGUUGUAGUAGUGAAUGGUAAAAGUGAAGGUGCAAAGUGAGAGCUAGUUGUCAACAUGAGGGGUAGAAACGAUUUAAAGGAGUUGGCAGUGGUUUGAGGCUGUGAUCCUACUUGUACUUCACUCAACCAAGUAUGAGUGGCUGUCUAGUGGCCUCAUGUAGAUGUUUCCUAGGAGAAGAUGAGAGGUAUGGUGAAGUUUGGGUGUAAAUUGGACUUUAACUCCCUCUCUCUCUCUUUCAUUGUCUCUUUGAAAAUAUAAUUUAGGAUCAAAGAGAUGAUUCACCAAGGUUGUUUGUAGGUAUUUGGAAAACAAAUAGGCCCAUAUAUAGAUGUUUCCUAGAAGGCUUGGAGUGGUAGAGUGGCAUUUUGGGUGGAAAUUCAAUUUAAACCCUUCUCUCACCUUUUGAGAAAUAAAAGAAGAUUUAAAUGAGAGAAGAGCAGAUGAUGUGUUGGCUAGGGUUGUAUGAUGAGUGGGCCCCAUAAGGACUUGGUCCCACAUUUAAGAGAGAUGUAGAAGGAGAGAACUAGAAGCUCUAAAUUUUCCAUGUGUUGGCACUAUCACACUAAACUAUAUUACUCUCUUUCUCUCAUCCAUUUAAUUUAGAAUUAAGGCCGGGGGAGGGGGGGUGACAGGGAGACAGCAAGGUAGACAAGGAUUUGAUGGUUCAAGGUGCCAAGUUCCAAAGUUUAAUUACUUUUGCUUUUACCAUGGUAAUUUAGUAAAGUUGACUAGUUAAUCUAUUGACCACAGUCCAGAAUACUGUUUACCUAACUUAUGGCUCUCAUUUUAUGAGGUUACAUUUCGAAUUAGACUAAGCCAUUGCACCAGAUGAUAGAGUAAAGUAUGCUUAACAUUUUGACCUAGAGAUUUUGCAAGAUGAGUUAUGGUUUAAUUUUGGUGAAGGUGCAAAGUAGGCUAAUUGGUAUGCUGUUUCCAGAUUUUUUAGCUGAGUUCAAGGAUUUAUUUGGGUUACCAAUUGAUGUGAUAAAUUAUUAUAACUAAAAUUUCUGGGAGCUUAGGGUAUUGUUUAGUAUUUAUGAGAAUUUUGGUGGGAUUUAUUGUUGCCUCAUUUAUUUUUAGGAAUUUUCUCUUUAGACAAAGCAUGCAUAUGCAACCUAUUAUGAGAUGUACCAAGAAUAUCCAAAAACAAUCUUAAAAGAAUAAUAUGCAGAUACAAGCAAGUUCUUUUUAUCUCAAUUUAGGUUUGCGUAUUUUGAUACCUACCUUUCAAUUUGUUUGAUAUUUAACUUAAAUAUAUUUUUUUAGUUAGGUUGAAAAUGCAAAACCGAGAAGAUUAGGUUUCUAGUUUAUGGUCAAAGCAAAAUUUUUGUUUCAAAAUUUUUUACCACAAGAUUUGUAAACUUUUACUUUUGGACUUAGUUUUGAUUUGGCCAGAAAAAUUAUGUGUUUUAUUUUAUUUUAGGGAGUUAUAUGCUCUAGUAUGCUUCUAUGUUCACCAAAAACUUUUGAAUUCAAAAUGUUUUAAAUUUUCCACAAAAUUUUUCCAUGGUGAAAUUCCUUGUAUGUUACAAGUUGAUAUGUGAAAUAAAAUUUUACCUUGUAAAAUAUGACUUGGAAUAGUUUUAUUAACUUCUCAAUAAUUAAUUAUGCUCUCUUAAAUUUUCUUGAAAUUUUCCGAGCUAAAGAAAUAAUUUUAAUAAUACUAACAUAAUUUCGGUCAUUAUUUAAAUUGAAAAAACAAUUUAAAAUUCUCUUCAUAUCUUUUGGCUGAAACCAAGCCAACUACUAUCCCUCUCCGUGCAGGCCCAAAGCCAUGCCAGGGAUCCGCGCGCCAUGGUGAGCAGCCGAUGAAUCUUCCGCCAUCUCCUGUCCUUCCGUCGUCUGACGAGGUAAGGUUUUCCCCCCCGAUUACCCCCAUUGCUACCUAAGUUGGUGAUUCAUUGGUAGAUCUACUUGUGGUUUAAUGUGCAAGAAUGCUUGGUAGAUCUGGUUGUUGUUGAAAGUGCAAGAAUGCAAGAAUGAAUGGUGUGAACUAAUGCAUAUGUCCUGGUAUGCUUAUUUCAAAGUACUGUGCAUAUGUGUAUUAUACACAAGUUAGCAUGCACAUUGAUCUUUGCCUCUUUUGCCGUAGGCCCUAGUAUGCAUAUGUGUAUUAUACCAUACUGUAUUAUGUACUUAUAAUGUGAAAUUAUAUGUGGAAUGCUCCACUGCAUAUUUGCUCUUGGUUAAUUAGUUUAGGAAAAAUUGCAAAUAUGAUCUUGUGAGAAUUUGUGAAGUACAUAGAAGGCAAUUUGUUUUGACAAUGAAGUAUGGUUUGUUGUUUGUUAAUUUAGUUCUCCGUAAUACUGCCUAAAUUUAAAUGUAUGUUUGGUGAACUGAAAUAGAUAUGGUUAGUGAUGUCAUUGUUUUUUAACGACUAUUUGUCCUUGUGAGUAAGGUUGUCAUUCCUCAGGUUUACUGCCUUUAGUGUGGCUAUAUGUCUCCCAAACCUGAGAAAACGAGGAAUGUGAUAGUAGCCGAGAAAUUGAUCAUGUUUCCUCCCCCCCCCCCGCCUCUUUUGCUUUCCUACUAGGUUUUGCAAUAAUUUUUGGCAUGACAAUCUUAAUUAUGUCCCAUAGUCUAAAACUCACAAAAACAUCAGAAAUCCGCUAAGAAUAAAUUAAGUAAAGAACAUGCAUACACAAAUAAUAUUAAUCAUGUCGUAAUAAAUUGCUAAGGUCAGAGACCAUCGGAUGACACAAUGGACAGUGCUAUGGCCUUAUUAAAAGCAGCAAGAGAAAUUAAAUAUGCUUGUGAGCGCACACAUGCACGACAUACAUAGAGUUGAGACCAACAGAUGGAUCCACUAUAGAUCGCCCCAUAUGGUCAACAAUUUAUUGAAGAUAACAUUAACAUAACUUGGCCAUAACUUGAAGCAAAACAACAUAUUCUUAUGAUAGGCAUUAAGACUGGUAGCAAUGCAAGCAUGUUGUUUUAGGCUUGUCCUUCCAUCUUAGCAAGAACUCCCAUUUCGUCCAUCUUAGCAAGAACUCCCAUUUCGUCCAUCUUAGCAACAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
86.99%
ME_num:
MEP:
9.55%
HE_num:
HEP:
3.25%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.98
Avg Expression:
7.16
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | -4.17670989976538 | 0.000745381206602799 |
2 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | -5.01906286917546 | 0.000415159242540215 |