RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC112939716

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

38317

End:

39565

Strand:

-

Ref_name:

LOC112939716

Sequence
(XR_003243574.1):

CAACAAAUUGAUGCUGAAUUUGGUGGUAGUAUCCAAGAUGCCAGUGCCAAAUAGAUGGAGGGAAUAAUGUUAGAAUAUCUGAGAAAAGUAAAGAGAAAAAUACUCCAAGGCUAUUUUUACCUUUCUAAUUUCAUGAUUUUUAUAUAGGACAAUGCUUGUCCCUUUUGGGGCUAAUCCAUACUUAUGAACAUCAGUUGAGAUUGAUGUAACUCCCUUGACACAGAAGUCGAAUGGAGGAAUAGGGUACCCAAGCUUACGAGCGAAAGGCAAUACAAAUCCACCAAGGCAGAGAUCAACAUGCAAGCAAAUGUCAUAUCGUGAAGCCAACUCCCCAAGUUCCUGAAGAUGAUCCGGGAUACAAGAAAUCACUGAACUUGCAGUGCACAAUUUCAGUAGGAAAAAAUAUUUUUGGUUUUCUUUAACAUAACGAUGAUUGAUUAACAUACCUCAAUAGGA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

79

LEP:

16.06%

ME_num:

338

MEP:

68.7%

HE_num:

74

HEP:

15.04%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

carpel

Tau :

0.73

Avg Expression:

7.14

Tip: OSA-LNC112939716 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: OSA-LNC112939716 is not a differential expression ncRNA.