Chr:
Chr1
Start:
25203147
End:
25212472
Strand:
+
Ref_name:
LOC112939714
Sequence
(XR_003243571.1):
GUAUGCUGGGCCCAGUUAGCAUUGGUCGAGCCGCUGUCUUCCUCGGCUCCUCUGCUUUGGUCGUGAAUCGGUGCCGCCGCGUGUCGGCCAUCGGCGAGGCUCUAGCGCUCAGAGUCGCGGGGCCGCUCCUCUCUCUGUCCGCCCCUGUCUCGACUCUCGAGCUAUGAUGGUGGACUGCUAUGGCGUACGGCGGCGACGGGAUUGGCUGCUGCUCGCUGCUCCACUACGCGGAGAGCCCCAUGACCAUGGCCAGGCGAUGGUUUGUCCGUUUCCCUCCCUUUCUUCUACAGAGAGUGCUGGUUCUAUUCUUUCUUGCUCUUCCUCAGCUCAUCUUUUCUUCUCCGCACAGUAUCGUCGCUGAUCGUAUCCUCCCUUGUGCUCUGUUGUUUUCCUCCUACGCCUUGCUCUAGAUUGCGCCGUUGUGGUUCGAGGGUUCUUUCGAUCAUGCGUGUGCCCACUGAUUUUUGGGUUUUCUGCUUUCUAGGCUGCGCUGCUGGAUUGGGGAUUCUCUGUUGGCGUUUUCACUUGGGGGAGGCAAGGAUUUGCCUCCCUCGUCUACUGCUCGCAAAGAUGGAUUACAGUCUCCUAAAGGAUGUCACACAGGAAUCACACCGUUGGCGCGUACGAGUGCGGGCAACCCGCUUCUCGGAGUUCACCAUAGCUAAUGAGCCUGACAAGAUUUUGCGCCUUGAUUUAGUCCUGCUUGAUGAGCAGGGAGACAUGAUGGAUGCGCAAAUCCCAAGAUGCCAUGUUGAUUAGUUCAAGCCUUUGCUAAAGGAAGGCGCUGUGUAUUACAUCAAAUACUUCGAAGUCGCCGAGGCACGCCCCCAGUAUAGGCCUGUUGAUCGGCUGUUGAUGGCAAAGUUCACUGCUCACACAACCGUUAUAGAAGAUACUAGACCACCAUCCACGUUCCCAUCUUAUGCCUGCAAAAUUCUUUCUUUUGAUGAACUCAGAGCUCGGGCUUACAAGAAAGAUAUUCUUUCAGAUGCUAUAGGCAUAAUGACAACCAUCGGGCCAAAGCAGACUGUUUCUUGUGCAGGUGUUAUGAAAGUUGUGCUUAAUGUCCAUAUAACCAAUGGAAGAGAAACUGCCGUCGUGGCAUUAUGGGGUCCCCAUGCUACACAAUUCCACGCUGAAAACUUGCAGCAGCAAGCAGACAAUGGACCUGUUGUCAUGUUAUUUGUUGGUUUAACUGUUAAAUUUUGAGACCGCCAGCUAGCCCUACAGGGUAGCACUGUCUGUAGAUGGUAUCCUAAUGCACCAAUCCAGGAAACAAUCUCCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
71.54%
ME_num:
MEP:
18.7%
HE_num:
HEP:
9.55%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.98
Avg Expression:
38.06
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 9.63359249879306 | 8.57287619941449e-10 |
| 2 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 6.92693601247798 | 4.90505963732127e-06 |
| 3 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -6.07149685148711 | 0.00458971827076542 |