Chr:
Chr1
Start:
25126551
End:
25127470
Strand:
+
Ref_name:
LOC112939706
Sequence
(XR_003243558.1):
UUCCAGAUUUCCUUUUUAUUUCCUCUUUUUAACACCAUUUUUUUUUUGCUCCAUUACUUCUUUUAUAUGCUUCCAUGUCAUUACACUUUUAGACUACUAGAACUGUUAGAUUGCUAUAUCCAUGUAGCAUUUGUUUUAAACUGCUAGGCUGUUCUUCCCAUGUAUGAACUUUUCUAUGUAGUGUAGUUUCGGAUCACUAAGGGAGUGUUUGAGGAGAAGGGGAUUGAGGAGAUUGGUAAGAUACGCAAAACGAGGUUUGAGUUCAAUGCCAUUUUCAACGAUCCUAAUGUUCUGCUAGUGAAAGUGCAACUUGGCAAUCUCCUUUUUUUUAAAAAAGAAACACAAUGUUCUCUUUUUUUCCCGCAUCAUGUUUUUAUUGUGCAAUUCAACUAUUUUUAUCAACAUUUUUUCAACCUGUCAAUUUGCCAUAUACAAAAAUGACGAGCUGAUAAACUCCAUAGUGCAAACCUGAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
58.94%
ME_num:
MEP:
37.2%
HE_num:
HEP:
3.66%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.90
Avg Expression:
10.49
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.95984813941886 | 0.00335076709722438 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.26576779389134 | 3.72515155276268e-05 |