Chr:
Chr7
Start:
25654464
End:
25657644
Strand:
-
Ref_name:
LOC112939664
Sequence
(XR_003243520.1):
UCCCCUUCUCUACAUAUAAACCAAGCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUUCUCAUGACCGGCCAUUGCCGCCACUGGCCGAUCUCCUCUUCCACAGCUCUGCAAGCCAAGUCCUUGCGCCAUCAUGUUUGCCUCGACGAGGUGAACCCAUUUUUCCCUUUUCCCCUCUCUUUUAGCCCCCACAACAAGCCACCACCGCCACUCCUUUUGUUGCCACGGUCGAGCUCUUGUCGUCGCCGUUUCGGCCUUCUCCUUCACUUUCUCCGCCAGCCACCGCACUCCCCGGAUGCUUUGUGCUCGGGAACACCACCCGCCGCCGGCGUCGCCAUCUUCCAGCCGCCGGAAAACCGGCGCCCCUCCUCUCCUUCUCCUCUGCUGCUCGUGCUGGAAAGAGGAGAAAAGAAGGAAGAGACGGGAGGAAGAAGGAGAAAAAGAAAAAGAAAAGAUACUGACAGAGUCUAUUUGGAGUUUUUGCCGAAGCUGGGAGUUCAAUCACAUAAGUUAGUUUCCUUUAAAACUAGUCUUCAAGUCUAGUAUAGUUAGACGGUUUAAUUCUAUAGUAAAACGGCAGAAUUGGGUCACAGUAUAGCUUCUGCUGUAAUAGUUAGCCACAAAUUUGUAAAUGUCCUAUUAUUUUAUAUAAAUAUAUCUCCUUUGGAGUCUUGACCAAAUGUAUGCGAUAAAGAUCCAGAUUGUUGAACCUGUAUCAAUCUACCGAUUCAGGGCUUGAUACAGUUAAAUAUGUCGGUUUCUGAAUCAUUAGUUUUGGGACCCAACACCUAGGCCCAAUUCCGCACCUGGGGUGCGACCACCUUGGACCUCCAUCCUAUUUAGAUUUACACGAUUAGUGGUUGGAACAUAUUAUUGUACGGGAAAUCUUGACAUUUAAACCUUUUAUAAAACUUAUUUUUCAAAUAAACCUUAAAAAACUACGUAUAUAAAAGUAGAUCCUGACAGAUGGCACUAACGGCAACUCUAAAGAAGUGGUGGGUUCCAUUUUACAACGUGAUGUACACCCUCCGUUUUAUAUUAUAAGUUGAUUUGAUUUUUUUUCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
72.56%
ME_num:
MEP:
24.19%
HE_num:
HEP:
3.05%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.83
Avg Expression:
2.79
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 3.92945849161694 | 0.00444347330772777 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 4.7802586565779 | 7.76343207343115e-05 |
| 3 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.27151718851407 | 0.00164411575726845 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 2.76522026156135 | 0.0121109919986 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 7.90406797208734 | 5.2527612506339e-24 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 3.81714905762999 | 2.46730425694661e-06 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 3.00059369734548 | 0.00157091683687073 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 6.51832575966662 | 9.47821724978853e-10 |
| 9 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.63704672754134 | 2.71157658830595e-06 |
| 10 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 5.87363654230037 | 0.00127898444898724 |
| 11 | 9311 // leaf // control--/--9311 // leaf // salt | 3.45023450711766 | 0.000251971721286337 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 3.41174662563511 | 0.000295007066657992 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 3.25167369278025 | 2.01389820379264e-05 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 2.16150368817585 | 0.0476245636770832 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 2.58250176927237 | 0.0158450933450935 |
| 16 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 6.17510943833227 | 0.00329040688537556 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 2.0740753172189 | 0.0459156845874725 |
| 18 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 6.17503870842844 | 0.00332604088178229 |
| 19 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 6.17490956040077 | 0.00330137773383347 |
| 20 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 4.06267426819652 | 0.0473869349988405 |
| 21 | 9L136 // leaf // control--/--9L136 // leaf // salt | 3.67195017562269 | 1.16724713802878e-05 |