Chr:
Chr7
Start:
28821910
End:
28824040
Strand:
-
Ref_name:
LOC112939645
Sequence
(XR_003243457.1):
GCAACAAAAUUCCGCAACCCUUGUCGUCUCCUUCCUCUCGCAUUCCUCCUCCUUACCUUGCCCUAGGUCGAGUCGACGCGACGAGAUUUGCGGCGGCGAUGGCUCUCCCGGCGUCGAGCUCCGGCCUCUUCCGCUUCAUCUCUCCACGGCGCCGCCCCCAGUCCACCGACAUCGCCGCCGCCGCCACCUGGGGCGUCUUCGCCGGCACCGCCGCCAUCUACCUCGUCCAGCCAUUUGACUGGAUUAAGAAAACUUUCUUUGAGAAACCCGAACCAGAGGCAUAAGUCUGCCAGGCAUAUGGAAGGCUGCAACUUUUGAUACAUUUACGUUUCCGGGAUGAUUUCUGAGUGAAGAGAACUUGGAUGACCCUGCAAAUAAUAUAAAAGACAGUCAUGUUCCCUUGUUUGAUUUUAAUGUAGGUUUCUCUUGCAUGUAAACCCCAGGAGGGGAAUGAUGAUUAUAUUGAGUUAUUUCUCAUCUCAGCGAAACCUUUUUCUUGGUUUUUUCUCAUCUCAGCGAAACCUUUUUCUUGGUUUAGCAGUGAUAUAAAUUCGUGGUCCUGAUGAUUGUUUGUCGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
0.2%
HE_num:
HEP:
99.59%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.73
Avg Expression:
687.83
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.08229266182704 | 2.3094786985199e-20 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.95087224304152 | 1.10602487877189e-74 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.50053960105452 | 3.77324630330934e-19 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.01299704852519 | 7.65249942746976e-73 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.21747147034283 | 2.85151473108412e-97 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.0620050996196 | 5.41230202653559e-110 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.52553611987527 | 1.68020717992137e-52 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.31669057314292 | 5.63314048745353e-25 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.63257208353082 | 1.52160039892091e-66 |