Chr:
Chr1
Start:
23782622
End:
23783506
Strand:
-
Ref_name:
LOC112939629
Sequence
(XR_003243431.1):
CUCCAAGGGGACCUCGUCGUGGGCAGCGGCCAUCGUCGAUCUCGCCGCCCCUAGGGCCCUCCAUGCCGGUGCACGAGGCCGGGGUUGUUGGCCUGCAGAAUGCGGAGGCCAGACGACGGCGUGGUGGAGGACCAGCUUCGAGCUCCCUGAAGGCGAGGGCGAGCUGGAAGCCGCCGAGGCGUAGGCUGCGCAACCUCGCUGGCGGGCAGACGUGCAACAGCGUGAUGUAGUCACUGGCGCGGAUGAAGUUUUGGAUGGCCCACUGCAGCGUGCCGCCAUCGCCGAUGGCAGCGACUGAUGGCGGCGUCGUCGAGAUGUGAUGAUGGCCGUAGCCGCGCGCCGCCCUGAACCCGCGCGCCGCCACCCGGGAGCCGCCGUCGCCGGCCGCGCGCGCCGUCGCCUGUGCGAGAGCAGAGAGCGAGAGGGAGGAAAGGAGAAGAGAAAAAAAAAAAAGAGAAGAGAGGAAAGAGAGCAGGAGCUGACAGGGACACCCUGCCAUGUGGGGUCCACGUGGGUCUCACGCUGACUCAGCCGUCACGUGAGACAAAACCGGGUCAAAACAAGUUAGGGGAUGUGUUGUAUCGGUUUUAUGGUUGGGGGACGAUUUUGUAACUCGGUGACAAGUUGAGGGACCUUCGGUGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
29.67%
ME_num:
MEP:
65.45%
HE_num:
HEP:
4.67%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.70
Avg Expression:
4.59
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 8.6936039289485 | 1.32763583676814e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.18247800148348 | 0.0493813914804526 |
| 3 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.22039077559634 | 0.0126541274647703 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.1850012532548 | 7.23652205874587e-06 |
| 5 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.9010949898683 | 1.16785472075324e-07 |