Chr:
Chr7
Start:
4165431
End:
4166722
Strand:
-
Ref_name:
LOC112939621
Sequence
(XR_003243405.1):
ACCUAUAUCAAAGUGUGUACUGGUCGGUCAGAGUAAUUUGGAGCCACUGCUAUAUAAAGCCUCUCAGAGCCUUCUUCUUCCUCUCAUAUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCGUGUGUGUGUGUGUGUGUGUGAAUUUUGGCUGUGUUUAGUUCAGUACAAAGUUUGGAUUUUGGUUGAAAUUAGAGAUGAUGUGACUGAAAAGUUGUGUGUGUAUGACAGGUUGAUGUAAUGGAAAAGGACUGAAGUUUGGAUCCAAACUUUAGAUCUAAACACAGCCUUGAUUGUUGAGGUGCAACCAUUAGGAGCUGAAGCUGCCAGCAUGAUCUGAUGAGUGCUUAUUAGGUGAGGGCAGAAUUGACUGCCAAAACAAAGAUCAGAUCAUGCUGUGCAGUUUCAUCUGCUUGUGGCUGCACAAAAUUAAAGGGCCAGAUUGUAUUCAUAUAUAUAUGUUGGUGUGAGGCUUACAUGCAAAUUUAUAUAUUCUUCUGUGUGCAGAUUUUAAUCUUGCAGGAUCGAUCAAAUCUUAGAUGUUUUGUUUGGGAGCUGAGCAUCCAUGAAUUAAUUGGAGAUCAAAUGAGCAAGAGUCAAGAACUGAGGAUGAAACAGGUGUGAAGAUCACAUGAGCUAGCAAGCCAAGAUCUGAAGAUGAACAGGUGUGAGAGACUAAUAAGGAGUUCUUUCUUUGCAUCAUCAACAUAUAUAAUGAAUGGUUAUUAUCUAAAAAUAUAUAUAUAAUGAAUGGUGUUGUAGGGUGUUCUUGCUAGCUUAGCAUGUUCAGGAGAAGCUAGCUAGCUAUAUGGAGCCAAUUAAUUAUCAUCAGUCUGGAGCAGCCAGCUAGACAAAUCUUGGGUCUGAUCUCUGCAAGCUUUUGAUGCUAGCCAGGAUAAUGAGAAGUAACAAAGUCAUAAAUAAAUACUAAUCUUGCAAAUUUCUCUCUUGUUUUUAUCUCAUACUAUAGUAUACAAGAUUGCAACUUGCAAGGUUUGUGAUAUGCAUGGCGAAGUGAACCGCAGAUAUUUUAUCUUACUGAAAUUAUUACGAGUACCGCCUGAAUGACAUGUGGGACCAGUCCACACUAUCGUCGUCACUACGGAUGUAUUAGUUGGGCAAAUUAUGAUUGUGUAAUUAUAUUACUUUAUCUCUCUUUAGAUAUAUUUUUUGAGACCAGAUUACACUAAUGUAUGACCAGAUUUGACGAUACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
26.83%
ME_num:
MEP:
56.5%
HE_num:
HEP:
16.46%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.95
Avg Expression:
32.97
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 5.68945652024929 | 1.09040328247321e-12 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 9.67974751544353 | 6.30405893318455e-38 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 5.16879715769798 | 4.63067005747199e-10 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 8.16006501678222 | 1.49227901363821e-27 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.32044799261612 | 4.01035864614201e-07 |
| 6 | Taichung 65 // shoot_apical_meristem // 0_days_after_shift--/--Taichung 65 // shoot_apical_meristem // 12_days_after_shift | 1.71388322466019 | 0.00689578987887825 |
| 7 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 4_days_after_shift | 2.33079833935228 | 3.28476792210975e-06 |
| 8 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift | 2.01333347969582 | 0.000108242939944135 |
| 9 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -5.48230160441317 | 0.00145752141796809 |
| 10 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -5.00941926010645 | 0.00700528195854496 |
| 11 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 5.2697020796863 | 0.00879129821332588 |
| 12 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.24286711677877 | 0.00824628228906581 |
| 13 | 9311 // leaf // control--/--9311 // leaf // salt | 2.36331253054568 | 1.95461774066314e-14 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 8.60347154579468 | 5.09266466879189e-31 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.67583633191528 | 1.43433210921388e-08 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.05245217978891 | 0.00974362538989641 |
| 17 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -6.39397667095016 | 0.00113235399195506 |
| 18 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | -1.44290977503296 | 0.0424618355239675 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 6.1257972741266 | 1.19640651314827e-14 |
| 20 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.9218156608752 | 5.00115202867995e-10 |
| 21 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -6.15191737125222 | 1.08037984004017e-05 |
| 22 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 6.11470023778302 | 1.23400316378137e-15 |