Chr:
Chr1
Start:
23423674
End:
23424766
Strand:
-
Ref_name:
LOC112939611
Sequence
(XR_003243377.1):
UAAUUUCUGUGAGCAGUCUACCCAUUAUUUUUGAGUACAACCAAAGAAAAUGGAAUCUAGGUGUAAUCAUUUACCUCCAGUAAAAUCAACACUAAUUAAUUUGGUCCACACAUUAAGUUAUGAAGCUACAAAGUUAGGGUUGAGAAAAUAAUCUAAAAAUUCGUCUAAAACCGUGUUCACCCAGAAUCUUCCCCACACCUCUCACUUCCACCUAGAGCACUUCGUCCUGGCCCACUUGGCAGCCUCUCCAGCUCGCCCUUUCUCUGUGCCUCACCCUCAGCCGACCAAGAACACAGAGAGGGAGAGAUCGAGCGAGCCGACGCGUGGCCACAACGUGUCGACGACCUCGGGCUUUCCUUUUCUUGCUCUCUUCUCCUCCAGUCUGAGUCGCCAUUCCUCACUCAUCACUCAGAGCCGAAGAAGCCGAGGGGAGCAGGUCCUCUGCCUCUCCGUCACCAGCGACCUCACCACCGGCCAUGGAGGUGACGACCAUCGCUAUCUCCGUUUGAGUCAAGCCACCGGAACGUGACCACGCCAACGACGCCCUGGAGCACGCACCGGAGCGCCGCCGCUUCAACCAUCGUCGUCGUCCGGCCAUUCUCGUCCACCUCGGAGCAAGCCGCUGCGCCAUCGUCAUCGUCUCAACCUCCUCUUCAAUACGCCUCAAGAACCCUAGCCGGAGAUGUGAAGGACUCGGAGAACACAUCUUUUCUUCACCAGCGCCGAUCUAGAAUCGCCUCUGCCGUCGAUUACCGCUGACUCGCUCGUCGUCCUGUUCGAGCCGUCGCCGUUCACCCGAGGAGGAGCGCCGCCGUCGAACCGUUCCAACCGAAGCCGCUGCUAUCCAAGCUUCAGCGAUUUCUUCCUACAGCUUGGUGAGCCUCCUGAACCUCUUAGGAAACACAUGCAUGGAUGCAUCUAGCAAAAUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
86.99%
ME_num:
MEP:
11.99%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.96
Avg Expression:
2.13
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 4.37598053040743 | 3.12559816531142e-06 |