Chr:
Chr1
Start:
23431377
End:
23438115
Strand:
-
Ref_name:
LOC112939609
Sequence
(XR_003243370.1):
AUAUGGAAGAAAAGAAAGGUAGGGUUAGGAGGUGGCGCGUGCGUGUGGGUUGGAGGCGCCGUCGGCGGAAGGAAAUUUGGUAGGAGCGAAUCAAAAAUCCUAAUCGAUCUCUGGGAUAAAAGCCGAGCGAUCGAUUUCCCCUUUCGUUAUCUUGGCCCAAACGUGUGGUUUCCCCUUGCCUUUUCUGGUCUAGGCGUAUCUGUCGUAUUGGGCUUGGGCCGUCCGCAACUUUCUUCGCAUGGCCCCGUUUCCUGAUUGCUUUUCUAUUUUUCCUUUUUUUUUUAUCAUCCUUAUCAGAAGCGGAAGCGGAAAAAUAUCAAAGAUAAAGUUAUAUCAGAAAUAGCGUUGUUGCGUUUUUGAACGGUGCGUUUCGCUUUUCUCUCCCCACAUUGAUAAUCCCAAAUCCUCUUAUCCCUUUCCGGCGAUUUCAAUUUCUCCAGUGAUUCUCCGACGAUUUUGUCCAACGCUACGAGCUUACUAUGUUGACCAAUUAACUGGAUGCUCCACAGAAAGUCAAUCGUUCUUAAUGAAGCGGAGGAGAGAGUUUCAGAGUUCCACUGUGGGAUUGAAGGUUGCUGAAACUGAGACAGUUGCAAAAAUGUUGAACUGCCCCAUUGGAGUUUUUCCUAUGAAAUAUCUGGGUUUGCCAAUUGGACCUGAGAAGAUUCUUACUCCUAAGUUAAAUUUUCUACUUGAGAGAAUGGAGAAGAGACUGAGUGGAUGGAAUGGUAGGAGUUUGACACAAGCAGGGAGAGCUGUUCAUAUCAAUGCCUGCCUUUCCUCUAUACCUUCUUAUGCAAUGUGAUUCUAUCUUCUUCCUGAGGGGACACAUCAAAGACUACUAGAGGUAGAUAUUACUGGGCUGAAAAUAAACACAAAGGGGAGAAAAUUAUAAGGCAAUACCAUUCUGUUCCACAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
49.59%
ME_num:
MEP:
31.91%
HE_num:
HEP:
18.29%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.95
Avg Expression:
38.20
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 6.24673964773815 | 0.0231902321162862 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.7328318884363 | 0.00166679373304739 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.31122432145079 | 0.00540787287638392 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.47111196907992 | 2.07148497450062e-05 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | 1.09353822510401 | 0.00152532224827714 |
| 6 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.24185390710392 | 0.0327452753694666 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.86325972104203 | 0.0109608860020478 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.04574085259655 | 0.00378209176447107 |
| 9 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.55785446711598 | 7.33938030451417e-16 |